Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02158

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02157 and H281DRAFT_02158 are separated by 297 nucleotidesH281DRAFT_02158 and H281DRAFT_02159 are separated by 397 nucleotides H281DRAFT_02157: H281DRAFT_02157 - cation diffusion facilitator family transporter, at 296,066 to 297,304 _02157 H281DRAFT_02158: H281DRAFT_02158 - DNA-binding protein H-NS, at 297,602 to 297,904 _02158 H281DRAFT_02159: H281DRAFT_02159 - hypothetical protein, at 298,302 to 298,964 _02159 Position (kb) 297 298Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 296.708 kb on - strand, within H281DRAFT_02157at 296.883 kb on + strand, within H281DRAFT_02157at 296.883 kb on + strand, within H281DRAFT_02157at 297.035 kb on + strand, within H281DRAFT_02157at 297.036 kb on - strand, within H281DRAFT_02157at 297.036 kb on - strand, within H281DRAFT_02157at 297.061 kb on + strand, within H281DRAFT_02157at 297.061 kb on + strand, within H281DRAFT_02157at 297.061 kb on + strand, within H281DRAFT_02157at 297.061 kb on + strand, within H281DRAFT_02157at 297.061 kb on + strand, within H281DRAFT_02157at 297.062 kb on - strand, within H281DRAFT_02157at 297.062 kb on - strand, within H281DRAFT_02157at 297.069 kb on + strand, within H281DRAFT_02157at 297.070 kb on - strand, within H281DRAFT_02157at 297.221 kb on + strandat 297.238 kb on + strandat 297.250 kb on + strandat 297.251 kb on - strandat 297.251 kb on - strandat 297.331 kb on + strandat 297.331 kb on + strandat 297.331 kb on + strandat 297.332 kb on - strandat 297.356 kb on - strandat 297.438 kb on - strandat 297.466 kb on - strandat 297.553 kb on + strandat 297.578 kb on + strandat 297.579 kb on - strandat 297.700 kb on - strand, within H281DRAFT_02158at 297.746 kb on - strand, within H281DRAFT_02158at 297.895 kb on - strandat 297.904 kb on + strandat 297.905 kb on - strandat 297.927 kb on - strandat 298.037 kb on - strandat 298.040 kb on - strandat 298.040 kb on - strandat 298.040 kb on - strandat 298.102 kb on - strandat 298.141 kb on - strandat 298.145 kb on - strandat 298.153 kb on - strandat 298.220 kb on + strandat 298.232 kb on + strandat 298.233 kb on - strandat 298.233 kb on - strandat 298.233 kb on - strandat 298.233 kb on - strandat 298.233 kb on - strandat 298.238 kb on - strandat 298.296 kb on - strandat 298.303 kb on + strandat 298.304 kb on - strandat 298.408 kb on - strand, within H281DRAFT_02159at 298.408 kb on - strand, within H281DRAFT_02159at 298.408 kb on - strand, within H281DRAFT_02159at 298.482 kb on + strand, within H281DRAFT_02159at 298.482 kb on + strand, within H281DRAFT_02159at 298.482 kb on + strand, within H281DRAFT_02159at 298.483 kb on - strand, within H281DRAFT_02159at 298.483 kb on - strand, within H281DRAFT_02159at 298.483 kb on - strand, within H281DRAFT_02159at 298.573 kb on + strand, within H281DRAFT_02159at 298.573 kb on + strand, within H281DRAFT_02159at 298.574 kb on - strand, within H281DRAFT_02159at 298.574 kb on - strand, within H281DRAFT_02159at 298.608 kb on - strand, within H281DRAFT_02159at 298.608 kb on - strand, within H281DRAFT_02159at 298.628 kb on - strand, within H281DRAFT_02159at 298.648 kb on + strand, within H281DRAFT_02159at 298.648 kb on + strand, within H281DRAFT_02159at 298.731 kb on + strand, within H281DRAFT_02159at 298.731 kb on + strand, within H281DRAFT_02159at 298.732 kb on - strand, within H281DRAFT_02159at 298.732 kb on - strand, within H281DRAFT_02159at 298.732 kb on - strand, within H281DRAFT_02159at 298.732 kb on - strand, within H281DRAFT_02159at 298.796 kb on + strand, within H281DRAFT_02159at 298.797 kb on - strand, within H281DRAFT_02159at 298.797 kb on - strand, within H281DRAFT_02159at 298.815 kb on + strand, within H281DRAFT_02159at 298.816 kb on - strand, within H281DRAFT_02159

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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296,708 - H281DRAFT_02157 0.52 -2.0
296,883 + H281DRAFT_02157 0.66 -2.5
296,883 + H281DRAFT_02157 0.66 -4.3
297,035 + H281DRAFT_02157 0.78 -2.3
297,036 - H281DRAFT_02157 0.78 -4.4
297,036 - H281DRAFT_02157 0.78 -1.4
297,061 + H281DRAFT_02157 0.80 -3.3
297,061 + H281DRAFT_02157 0.80 -3.5
297,061 + H281DRAFT_02157 0.80 -4.3
297,061 + H281DRAFT_02157 0.80 -0.9
297,061 + H281DRAFT_02157 0.80 -1.2
297,062 - H281DRAFT_02157 0.80 -3.3
297,062 - H281DRAFT_02157 0.80 -1.2
297,069 + H281DRAFT_02157 0.81 -5.7
297,070 - H281DRAFT_02157 0.81 -2.5
297,221 + -5.3
297,238 + -2.5
297,250 + -2.8
297,251 - -2.2
297,251 - -2.1
297,331 + -1.6
297,331 + -5.0
297,331 + -3.9
297,332 - +0.1
297,356 - +1.0
297,438 - +0.5
297,466 - +0.4
297,553 + -1.4
297,578 + -0.1
297,579 - +0.2
297,700 - H281DRAFT_02158 0.32 +0.1
297,746 - H281DRAFT_02158 0.48 -0.5
297,895 - -0.5
297,904 + -1.7
297,905 - +0.3
297,927 - -0.9
298,037 - -0.8
298,040 - -0.7
298,040 - -1.3
298,040 - -0.7
298,102 - -0.7
298,141 - -0.5
298,145 - -1.0
298,153 - -0.6
298,220 + +0.4
298,232 + -0.4
298,233 - +0.0
298,233 - -0.1
298,233 - -3.0
298,233 - -0.1
298,233 - -0.5
298,238 - -0.9
298,296 - -0.1
298,303 + -0.2
298,304 - -0.1
298,408 - H281DRAFT_02159 0.16 -0.8
298,408 - H281DRAFT_02159 0.16 +0.8
298,408 - H281DRAFT_02159 0.16 -0.5
298,482 + H281DRAFT_02159 0.27 -0.8
298,482 + H281DRAFT_02159 0.27 -1.7
298,482 + H281DRAFT_02159 0.27 -1.9
298,483 - H281DRAFT_02159 0.27 -0.1
298,483 - H281DRAFT_02159 0.27 +0.1
298,483 - H281DRAFT_02159 0.27 +1.3
298,573 + H281DRAFT_02159 0.41 +0.7
298,573 + H281DRAFT_02159 0.41 -1.2
298,574 - H281DRAFT_02159 0.41 +0.1
298,574 - H281DRAFT_02159 0.41 -0.4
298,608 - H281DRAFT_02159 0.46 +0.1
298,608 - H281DRAFT_02159 0.46 +0.5
298,628 - H281DRAFT_02159 0.49 +0.1
298,648 + H281DRAFT_02159 0.52 +0.5
298,648 + H281DRAFT_02159 0.52 +0.8
298,731 + H281DRAFT_02159 0.65 -0.3
298,731 + H281DRAFT_02159 0.65 -1.7
298,732 - H281DRAFT_02159 0.65 +0.7
298,732 - H281DRAFT_02159 0.65 -0.3
298,732 - H281DRAFT_02159 0.65 +0.2
298,732 - H281DRAFT_02159 0.65 -0.3
298,796 + H281DRAFT_02159 0.75 +0.8
298,797 - H281DRAFT_02159 0.75 -0.4
298,797 - H281DRAFT_02159 0.75 -0.0
298,815 + H281DRAFT_02159 0.77 -0.1
298,816 - H281DRAFT_02159 0.78 +1.2

Or see this region's nucleotide sequence