Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02112

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02111 and H281DRAFT_02112 are separated by 207 nucleotidesH281DRAFT_02112 and H281DRAFT_02113 are separated by 579 nucleotides H281DRAFT_02111: H281DRAFT_02111 - transcriptional regulator, LysR family, at 238,746 to 239,681 _02111 H281DRAFT_02112: H281DRAFT_02112 - Outer membrane protein (porin), at 239,889 to 240,974 _02112 H281DRAFT_02113: H281DRAFT_02113 - hypothetical protein, at 241,554 to 242,009 _02113 Position (kb) 239 240 241Strain fitness (log2 ratio) -2 -1 0 1 2at 239.102 kb on - strand, within H281DRAFT_02111at 239.102 kb on - strand, within H281DRAFT_02111at 239.164 kb on + strand, within H281DRAFT_02111at 239.329 kb on + strand, within H281DRAFT_02111at 239.485 kb on + strand, within H281DRAFT_02111at 239.489 kb on - strand, within H281DRAFT_02111at 239.489 kb on - strand, within H281DRAFT_02111at 239.698 kb on - strandat 239.728 kb on + strandat 239.877 kb on - strandat 239.918 kb on - strandat 239.921 kb on + strandat 239.922 kb on - strandat 239.953 kb on + strandat 239.953 kb on + strandat 239.953 kb on + strandat 239.953 kb on + strandat 239.953 kb on + strandat 239.953 kb on + strandat 239.954 kb on - strandat 239.954 kb on - strandat 239.954 kb on - strandat 239.969 kb on - strandat 240.002 kb on - strand, within H281DRAFT_02112at 240.055 kb on + strand, within H281DRAFT_02112at 240.061 kb on + strand, within H281DRAFT_02112at 240.157 kb on + strand, within H281DRAFT_02112at 240.157 kb on + strand, within H281DRAFT_02112at 240.157 kb on + strand, within H281DRAFT_02112at 240.157 kb on + strand, within H281DRAFT_02112at 240.157 kb on + strand, within H281DRAFT_02112at 240.158 kb on - strand, within H281DRAFT_02112at 240.158 kb on - strand, within H281DRAFT_02112at 240.158 kb on - strand, within H281DRAFT_02112at 240.158 kb on - strand, within H281DRAFT_02112at 240.163 kb on + strand, within H281DRAFT_02112at 240.163 kb on + strand, within H281DRAFT_02112at 240.163 kb on + strand, within H281DRAFT_02112at 240.163 kb on + strand, within H281DRAFT_02112at 240.164 kb on - strand, within H281DRAFT_02112at 240.164 kb on - strand, within H281DRAFT_02112at 240.185 kb on - strand, within H281DRAFT_02112at 240.295 kb on + strand, within H281DRAFT_02112at 240.295 kb on + strand, within H281DRAFT_02112at 240.295 kb on + strand, within H281DRAFT_02112at 240.295 kb on + strand, within H281DRAFT_02112at 240.295 kb on + strand, within H281DRAFT_02112at 240.296 kb on - strand, within H281DRAFT_02112at 240.296 kb on - strand, within H281DRAFT_02112at 240.301 kb on + strand, within H281DRAFT_02112at 240.334 kb on + strand, within H281DRAFT_02112at 240.335 kb on - strand, within H281DRAFT_02112at 240.335 kb on - strand, within H281DRAFT_02112at 240.391 kb on + strand, within H281DRAFT_02112at 240.391 kb on + strand, within H281DRAFT_02112at 240.391 kb on + strand, within H281DRAFT_02112at 240.392 kb on - strand, within H281DRAFT_02112at 240.392 kb on - strand, within H281DRAFT_02112at 240.392 kb on - strand, within H281DRAFT_02112at 240.392 kb on - strand, within H281DRAFT_02112at 240.392 kb on - strand, within H281DRAFT_02112at 240.433 kb on + strand, within H281DRAFT_02112at 240.446 kb on + strand, within H281DRAFT_02112at 240.469 kb on - strand, within H281DRAFT_02112at 240.487 kb on + strand, within H281DRAFT_02112at 240.487 kb on + strand, within H281DRAFT_02112at 240.514 kb on + strand, within H281DRAFT_02112at 240.514 kb on + strand, within H281DRAFT_02112at 240.514 kb on + strand, within H281DRAFT_02112at 240.515 kb on - strand, within H281DRAFT_02112at 240.523 kb on + strand, within H281DRAFT_02112at 240.523 kb on + strand, within H281DRAFT_02112at 240.524 kb on - strand, within H281DRAFT_02112at 240.544 kb on + strand, within H281DRAFT_02112at 240.544 kb on + strand, within H281DRAFT_02112at 240.544 kb on + strand, within H281DRAFT_02112at 240.545 kb on - strand, within H281DRAFT_02112at 240.545 kb on - strand, within H281DRAFT_02112at 240.643 kb on + strand, within H281DRAFT_02112at 240.686 kb on - strand, within H281DRAFT_02112at 240.722 kb on + strand, within H281DRAFT_02112at 240.723 kb on - strand, within H281DRAFT_02112at 240.776 kb on - strand, within H281DRAFT_02112at 240.776 kb on - strand, within H281DRAFT_02112at 240.865 kb on + strand, within H281DRAFT_02112at 240.936 kb on - strandat 240.936 kb on - strandat 241.099 kb on + strandat 241.099 kb on + strandat 241.099 kb on + strandat 241.099 kb on + strandat 241.112 kb on - strandat 241.130 kb on + strandat 241.130 kb on + strandat 241.130 kb on + strandat 241.145 kb on - strandat 241.168 kb on + strandat 241.168 kb on + strandat 241.168 kb on + strandat 241.295 kb on - strandat 241.395 kb on + strandat 241.402 kb on + strandat 241.415 kb on - strandat 241.440 kb on - strandat 241.526 kb on + strandat 241.526 kb on + strandat 241.555 kb on + strandat 241.556 kb on - strandat 241.556 kb on - strandat 241.556 kb on - strandat 241.637 kb on + strand, within H281DRAFT_02113at 241.639 kb on + strand, within H281DRAFT_02113at 241.639 kb on + strand, within H281DRAFT_02113at 241.744 kb on + strand, within H281DRAFT_02113at 241.744 kb on + strand, within H281DRAFT_02113at 241.745 kb on - strand, within H281DRAFT_02113at 241.745 kb on - strand, within H281DRAFT_02113at 241.745 kb on - strand, within H281DRAFT_02113at 241.871 kb on - strand, within H281DRAFT_02113at 241.885 kb on + strand, within H281DRAFT_02113at 241.885 kb on + strand, within H281DRAFT_02113at 241.885 kb on + strand, within H281DRAFT_02113at 241.885 kb on + strand, within H281DRAFT_02113at 241.885 kb on + strand, within H281DRAFT_02113at 241.885 kb on + strand, within H281DRAFT_02113at 241.886 kb on - strand, within H281DRAFT_02113at 241.886 kb on - strand, within H281DRAFT_02113

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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239,102 - H281DRAFT_02111 0.38 +0.2
239,102 - H281DRAFT_02111 0.38 +0.0
239,164 + H281DRAFT_02111 0.45 -1.0
239,329 + H281DRAFT_02111 0.62 +0.3
239,485 + H281DRAFT_02111 0.79 -0.1
239,489 - H281DRAFT_02111 0.79 +0.4
239,489 - H281DRAFT_02111 0.79 -0.2
239,698 - -0.2
239,728 + +1.4
239,877 - -0.3
239,918 - +0.3
239,921 + +0.1
239,922 - -0.9
239,953 + -0.8
239,953 + +0.0
239,953 + +0.2
239,953 + -0.4
239,953 + +0.2
239,953 + -0.8
239,954 - -0.4
239,954 - +0.3
239,954 - -2.0
239,969 - +0.8
240,002 - H281DRAFT_02112 0.10 -0.4
240,055 + H281DRAFT_02112 0.15 -1.7
240,061 + H281DRAFT_02112 0.16 -0.4
240,157 + H281DRAFT_02112 0.25 +0.6
240,157 + H281DRAFT_02112 0.25 -0.5
240,157 + H281DRAFT_02112 0.25 +0.4
240,157 + H281DRAFT_02112 0.25 -0.3
240,157 + H281DRAFT_02112 0.25 -0.3
240,158 - H281DRAFT_02112 0.25 -1.0
240,158 - H281DRAFT_02112 0.25 +0.2
240,158 - H281DRAFT_02112 0.25 -0.4
240,158 - H281DRAFT_02112 0.25 -0.3
240,163 + H281DRAFT_02112 0.25 -1.1
240,163 + H281DRAFT_02112 0.25 -0.3
240,163 + H281DRAFT_02112 0.25 +0.9
240,163 + H281DRAFT_02112 0.25 +0.2
240,164 - H281DRAFT_02112 0.25 -0.1
240,164 - H281DRAFT_02112 0.25 -0.1
240,185 - H281DRAFT_02112 0.27 +0.4
240,295 + H281DRAFT_02112 0.37 +0.1
240,295 + H281DRAFT_02112 0.37 +0.2
240,295 + H281DRAFT_02112 0.37 -0.2
240,295 + H281DRAFT_02112 0.37 -0.3
240,295 + H281DRAFT_02112 0.37 +0.4
240,296 - H281DRAFT_02112 0.37 -1.1
240,296 - H281DRAFT_02112 0.37 -0.0
240,301 + H281DRAFT_02112 0.38 -0.4
240,334 + H281DRAFT_02112 0.41 -0.2
240,335 - H281DRAFT_02112 0.41 +0.2
240,335 - H281DRAFT_02112 0.41 -0.1
240,391 + H281DRAFT_02112 0.46 +0.0
240,391 + H281DRAFT_02112 0.46 -0.4
240,391 + H281DRAFT_02112 0.46 +0.2
240,392 - H281DRAFT_02112 0.46 +0.4
240,392 - H281DRAFT_02112 0.46 +0.1
240,392 - H281DRAFT_02112 0.46 +0.0
240,392 - H281DRAFT_02112 0.46 +0.4
240,392 - H281DRAFT_02112 0.46 -0.9
240,433 + H281DRAFT_02112 0.50 +0.4
240,446 + H281DRAFT_02112 0.51 +0.6
240,469 - H281DRAFT_02112 0.53 +0.0
240,487 + H281DRAFT_02112 0.55 -0.1
240,487 + H281DRAFT_02112 0.55 +0.4
240,514 + H281DRAFT_02112 0.58 -0.1
240,514 + H281DRAFT_02112 0.58 -0.2
240,514 + H281DRAFT_02112 0.58 -0.4
240,515 - H281DRAFT_02112 0.58 -0.3
240,523 + H281DRAFT_02112 0.58 +0.0
240,523 + H281DRAFT_02112 0.58 +0.2
240,524 - H281DRAFT_02112 0.58 -0.1
240,544 + H281DRAFT_02112 0.60 -0.5
240,544 + H281DRAFT_02112 0.60 +0.8
240,544 + H281DRAFT_02112 0.60 +0.1
240,545 - H281DRAFT_02112 0.60 +0.5
240,545 - H281DRAFT_02112 0.60 -0.5
240,643 + H281DRAFT_02112 0.69 -2.5
240,686 - H281DRAFT_02112 0.73 +1.1
240,722 + H281DRAFT_02112 0.77 +0.9
240,723 - H281DRAFT_02112 0.77 +0.6
240,776 - H281DRAFT_02112 0.82 -0.5
240,776 - H281DRAFT_02112 0.82 +0.0
240,865 + H281DRAFT_02112 0.90 -0.4
240,936 - +1.2
240,936 - +0.8
241,099 + +0.9
241,099 + +0.2
241,099 + -0.4
241,099 + -0.4
241,112 - +1.0
241,130 + +0.1
241,130 + -0.2
241,130 + +0.0
241,145 - -0.9
241,168 + +2.0
241,168 + +0.1
241,168 + -0.3
241,295 - -0.0
241,395 + -0.5
241,402 + -0.7
241,415 - -0.5
241,440 - +0.1
241,526 + +0.2
241,526 + -0.6
241,555 + -0.3
241,556 - +0.0
241,556 - +0.4
241,556 - -0.2
241,637 + H281DRAFT_02113 0.18 +0.2
241,639 + H281DRAFT_02113 0.19 +0.4
241,639 + H281DRAFT_02113 0.19 -0.2
241,744 + H281DRAFT_02113 0.42 -0.4
241,744 + H281DRAFT_02113 0.42 -0.3
241,745 - H281DRAFT_02113 0.42 -0.5
241,745 - H281DRAFT_02113 0.42 -0.1
241,745 - H281DRAFT_02113 0.42 +0.1
241,871 - H281DRAFT_02113 0.70 -0.9
241,885 + H281DRAFT_02113 0.73 +0.5
241,885 + H281DRAFT_02113 0.73 +0.1
241,885 + H281DRAFT_02113 0.73 -0.1
241,885 + H281DRAFT_02113 0.73 +0.1
241,885 + H281DRAFT_02113 0.73 -0.7
241,885 + H281DRAFT_02113 0.73 -0.1
241,886 - H281DRAFT_02113 0.73 -0.0
241,886 - H281DRAFT_02113 0.73 -0.2

Or see this region's nucleotide sequence