Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01748 and H281DRAFT_01749 are separated by 4 nucleotides H281DRAFT_01749 and H281DRAFT_01750 are separated by 100 nucleotides
H281DRAFT_01748: H281DRAFT_01748 - Bacteriophytochrome (light-regulated signal transduction histidine kinase), at 643,126 to 645,504
_01748
H281DRAFT_01749: H281DRAFT_01749 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 645,509 to 645,946
_01749
H281DRAFT_01750: H281DRAFT_01750 - PAS domain S-box-containing protein, at 646,047 to 647,720
_01750
Position (kb) 645
646 Strain fitness (log2 ratio) -1
0
1
2 at 645.149 kb on + strand, within H281DRAFT_01748 at 645.206 kb on - strand, within H281DRAFT_01748 at 645.636 kb on - strand, within H281DRAFT_01749 at 645.846 kb on - strand, within H281DRAFT_01749 at 645.951 kb on + strand at 645.951 kb on + strand at 646.055 kb on - strand at 646.142 kb on + strand at 646.161 kb on + strand at 646.162 kb on - strand at 646.162 kb on - strand at 646.563 kb on - strand, within H281DRAFT_01750 at 646.563 kb on - strand, within H281DRAFT_01750 at 646.659 kb on + strand, within H281DRAFT_01750
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 645,149 + H281DRAFT_01748 0.85 -0.7 645,206 - H281DRAFT_01748 0.87 -0.3 645,636 - H281DRAFT_01749 0.29 +0.7 645,846 - H281DRAFT_01749 0.77 +0.7 645,951 + +1.6 645,951 + +2.3 646,055 - -0.3 646,142 + +0.0 646,161 + +0.8 646,162 - -0.3 646,162 - +1.7 646,563 - H281DRAFT_01750 0.31 +0.1 646,563 - H281DRAFT_01750 0.31 +0.8 646,659 + H281DRAFT_01750 0.37 +0.6
Or see this region's nucleotide sequence