Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00929

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00927 and H281DRAFT_00928 overlap by 1 nucleotidesH281DRAFT_00928 and H281DRAFT_00929 are separated by 95 nucleotidesH281DRAFT_00929 and H281DRAFT_00930 are separated by 93 nucleotidesH281DRAFT_00930 and H281DRAFT_00931 are separated by 70 nucleotides H281DRAFT_00927: H281DRAFT_00927 - UPF0755 protein, at 1,031,087 to 1,032,097 _00927 H281DRAFT_00928: H281DRAFT_00928 - thymidylate kinase, at 1,032,097 to 1,032,717 _00928 H281DRAFT_00929: H281DRAFT_00929 - DNA polymerase III, delta prime subunit, at 1,032,813 to 1,033,847 _00929 H281DRAFT_00930: H281DRAFT_00930 - phosphinothricin acetyltransferase, at 1,033,941 to 1,034,465 _00930 H281DRAFT_00931: H281DRAFT_00931 - TatD DNase family protein, at 1,034,536 to 1,035,330 _00931 Position (kb) 1032 1033 1034Strain fitness (log2 ratio) -1 0 1at 1031.840 kb on + strand, within H281DRAFT_00927at 1031.908 kb on + strand, within H281DRAFT_00927at 1031.912 kb on + strand, within H281DRAFT_00927at 1031.914 kb on + strand, within H281DRAFT_00927at 1031.941 kb on + strand, within H281DRAFT_00927at 1031.941 kb on + strand, within H281DRAFT_00927at 1031.941 kb on + strand, within H281DRAFT_00927at 1032.080 kb on + strandat 1032.080 kb on + strandat 1032.731 kb on + strandat 1032.775 kb on + strandat 1033.903 kb on - strandat 1033.998 kb on + strand, within H281DRAFT_00930at 1034.053 kb on + strand, within H281DRAFT_00930at 1034.053 kb on + strand, within H281DRAFT_00930at 1034.104 kb on + strand, within H281DRAFT_00930at 1034.114 kb on - strand, within H281DRAFT_00930at 1034.114 kb on - strand, within H281DRAFT_00930at 1034.114 kb on - strand, within H281DRAFT_00930at 1034.169 kb on + strand, within H281DRAFT_00930at 1034.207 kb on + strand, within H281DRAFT_00930at 1034.207 kb on + strand, within H281DRAFT_00930at 1034.212 kb on - strand, within H281DRAFT_00930at 1034.212 kb on - strand, within H281DRAFT_00930at 1034.212 kb on - strand, within H281DRAFT_00930at 1034.212 kb on - strand, within H281DRAFT_00930at 1034.608 kb on - strandat 1034.704 kb on + strand, within H281DRAFT_00931at 1034.821 kb on + strand, within H281DRAFT_00931at 1034.822 kb on - strand, within H281DRAFT_00931at 1034.822 kb on - strand, within H281DRAFT_00931

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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1,031,840 + H281DRAFT_00927 0.74 -0.6
1,031,908 + H281DRAFT_00927 0.81 -0.4
1,031,912 + H281DRAFT_00927 0.82 -0.4
1,031,914 + H281DRAFT_00927 0.82 +0.0
1,031,941 + H281DRAFT_00927 0.84 +0.4
1,031,941 + H281DRAFT_00927 0.84 -0.2
1,031,941 + H281DRAFT_00927 0.84 +0.3
1,032,080 + +0.2
1,032,080 + +0.5
1,032,731 + +0.2
1,032,775 + -0.1
1,033,903 - +1.0
1,033,998 + H281DRAFT_00930 0.11 +0.1
1,034,053 + H281DRAFT_00930 0.21 -0.4
1,034,053 + H281DRAFT_00930 0.21 +0.6
1,034,104 + H281DRAFT_00930 0.31 -0.3
1,034,114 - H281DRAFT_00930 0.33 +0.5
1,034,114 - H281DRAFT_00930 0.33 -0.5
1,034,114 - H281DRAFT_00930 0.33 +0.2
1,034,169 + H281DRAFT_00930 0.43 +0.1
1,034,207 + H281DRAFT_00930 0.51 -0.1
1,034,207 + H281DRAFT_00930 0.51 +0.6
1,034,212 - H281DRAFT_00930 0.52 +0.2
1,034,212 - H281DRAFT_00930 0.52 -0.5
1,034,212 - H281DRAFT_00930 0.52 -1.5
1,034,212 - H281DRAFT_00930 0.52 +0.2
1,034,608 - -1.0
1,034,704 + H281DRAFT_00931 0.21 -0.2
1,034,821 + H281DRAFT_00931 0.36 +0.1
1,034,822 - H281DRAFT_00931 0.36 +0.1
1,034,822 - H281DRAFT_00931 0.36 +0.1

Or see this region's nucleotide sequence