Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00345 and H281DRAFT_00346 are separated by 241 nucleotides H281DRAFT_00346 and H281DRAFT_00347 are separated by 121 nucleotides H281DRAFT_00347 and H281DRAFT_00348 overlap by 4 nucleotides
H281DRAFT_00345: H281DRAFT_00345 - Transglutaminase-like enzyme, putative cysteine protease, at 377,815 to 378,618
_00345
H281DRAFT_00346: H281DRAFT_00346 - hypothetical protein, at 378,860 to 379,009
_00346
H281DRAFT_00347: H281DRAFT_00347 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 379,131 to 380,669
_00347
H281DRAFT_00348: H281DRAFT_00348 - membrane fusion protein, multidrug efflux system, at 380,666 to 381,742
_00348
Position (kb) 379
380
381 Strain fitness (log2 ratio) -1
0
1 at 379.103 kb on - strand at 379.157 kb on - strand at 380.274 kb on - strand, within H281DRAFT_00347 at 380.274 kb on - strand, within H281DRAFT_00347 at 381.542 kb on - strand, within H281DRAFT_00348 at 381.612 kb on + strand, within H281DRAFT_00348 at 381.658 kb on + strand at 381.658 kb on + strand at 381.658 kb on + strand at 381.668 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 379,103 - -1.3 379,157 - -0.0 380,274 - H281DRAFT_00347 0.74 -0.0 380,274 - H281DRAFT_00347 0.74 +1.1 381,542 - H281DRAFT_00348 0.81 +1.5 381,612 + H281DRAFT_00348 0.88 -0.2 381,658 + +0.0 381,658 + -0.5 381,658 + +0.1 381,668 + +0.2
Or see this region's nucleotide sequence