Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_863 and HP15_864 are separated by 138 nucleotides HP15_864 and HP15_865 are separated by 30 nucleotides HP15_865 and HP15_866 overlap by 10 nucleotides
HP15_863: HP15_863 - ribonuclease Z, at 884,897 to 885,868
_863
HP15_864: HP15_864 - enoyl-CoA hydratase/isomerase family protein, at 886,007 to 886,852
_864
HP15_865: HP15_865 - abortive infection protein, at 886,883 to 887,473
_865
HP15_866: HP15_866 - conserved hypothetical protein, membrane, at 887,464 to 887,883
_866
Position (kb) 886
887 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 885.013 kb on - strand, within HP15_863 at 885.069 kb on - strand, within HP15_863 at 885.120 kb on + strand, within HP15_863 at 885.137 kb on + strand, within HP15_863 at 885.210 kb on + strand, within HP15_863 at 885.341 kb on - strand, within HP15_863 at 885.381 kb on + strand, within HP15_863 at 885.386 kb on + strand, within HP15_863 at 885.394 kb on - strand, within HP15_863 at 885.460 kb on - strand, within HP15_863 at 885.461 kb on - strand, within HP15_863 at 885.500 kb on + strand, within HP15_863 at 885.552 kb on + strand, within HP15_863 at 885.613 kb on - strand, within HP15_863 at 885.613 kb on - strand, within HP15_863 at 885.628 kb on + strand, within HP15_863 at 885.761 kb on + strand, within HP15_863 at 885.786 kb on - strand at 885.868 kb on + strand at 885.908 kb on + strand at 885.912 kb on + strand at 885.913 kb on + strand at 886.087 kb on - strand at 886.117 kb on + strand, within HP15_864 at 886.130 kb on - strand, within HP15_864 at 886.222 kb on - strand, within HP15_864 at 886.281 kb on + strand, within HP15_864 at 886.304 kb on + strand, within HP15_864 at 886.423 kb on - strand, within HP15_864 at 886.522 kb on + strand, within HP15_864 at 886.615 kb on + strand, within HP15_864 at 886.694 kb on + strand, within HP15_864 at 886.706 kb on + strand, within HP15_864 at 886.714 kb on - strand, within HP15_864 at 886.714 kb on - strand, within HP15_864 at 886.716 kb on + strand, within HP15_864 at 886.790 kb on + strand at 886.925 kb on - strand at 887.011 kb on + strand, within HP15_865 at 887.021 kb on + strand, within HP15_865 at 887.195 kb on + strand, within HP15_865 at 887.252 kb on + strand, within HP15_865 at 887.270 kb on - strand, within HP15_865 at 887.318 kb on + strand, within HP15_865 at 887.367 kb on - strand, within HP15_865 at 887.376 kb on + strand, within HP15_865 at 887.424 kb on + strand at 887.432 kb on - strand at 887.432 kb on - strand at 887.513 kb on - strand, within HP15_866 at 887.545 kb on + strand, within HP15_866 at 887.589 kb on + strand, within HP15_866 at 887.667 kb on + strand, within HP15_866 at 887.776 kb on - strand, within HP15_866
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 885,013 - HP15_863 0.12 -0.1 885,069 - HP15_863 0.18 -3.3 885,120 + HP15_863 0.23 -1.8 885,137 + HP15_863 0.25 -0.0 885,210 + HP15_863 0.32 +0.4 885,341 - HP15_863 0.46 +0.9 885,381 + HP15_863 0.50 -1.5 885,386 + HP15_863 0.50 +0.9 885,394 - HP15_863 0.51 -1.6 885,460 - HP15_863 0.58 +0.6 885,461 - HP15_863 0.58 -0.7 885,500 + HP15_863 0.62 +0.1 885,552 + HP15_863 0.67 +0.1 885,613 - HP15_863 0.74 +0.9 885,613 - HP15_863 0.74 -1.7 885,628 + HP15_863 0.75 -0.3 885,761 + HP15_863 0.89 +1.1 885,786 - +0.1 885,868 + -0.4 885,908 + +0.1 885,912 + +0.9 885,913 + +0.2 886,087 - -0.1 886,117 + HP15_864 0.13 -0.1 886,130 - HP15_864 0.15 +0.1 886,222 - HP15_864 0.25 +1.1 886,281 + HP15_864 0.32 -2.1 886,304 + HP15_864 0.35 +0.3 886,423 - HP15_864 0.49 -1.4 886,522 + HP15_864 0.61 -2.1 886,615 + HP15_864 0.72 -1.3 886,694 + HP15_864 0.81 +0.3 886,706 + HP15_864 0.83 +0.0 886,714 - HP15_864 0.84 +0.8 886,714 - HP15_864 0.84 -1.4 886,716 + HP15_864 0.84 +0.0 886,790 + -0.7 886,925 - -2.3 887,011 + HP15_865 0.22 +1.9 887,021 + HP15_865 0.23 +1.6 887,195 + HP15_865 0.53 +0.5 887,252 + HP15_865 0.62 -0.6 887,270 - HP15_865 0.65 +0.2 887,318 + HP15_865 0.74 +1.0 887,367 - HP15_865 0.82 +0.4 887,376 + HP15_865 0.83 -0.1 887,424 + +0.2 887,432 - -0.5 887,432 - -1.5 887,513 - HP15_866 0.12 +0.3 887,545 + HP15_866 0.19 -1.8 887,589 + HP15_866 0.30 -0.2 887,667 + HP15_866 0.48 -0.7 887,776 - HP15_866 0.74 +1.6
Or see this region's nucleotide sequence