Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4010 and HP15_4011 are separated by 68 nucleotides HP15_4011 and HP15_4012 are separated by 78 nucleotides HP15_4012 and HP15_4013 are separated by 70 nucleotides HP15_4013 and HP15_4014 are separated by 93 nucleotides
HP15_4010: HP15_4010 - flagellar motor protein PomA, at 4,245,538 to 4,246,308
_4010
HP15_4011: HP15_4011 - protein containing DUF1232, at 4,246,377 to 4,246,796
_4011
HP15_4012: HP15_4012 - conserved hypothetical protein, at 4,246,875 to 4,247,132
_4012
HP15_4013: HP15_4013 - DTW domain containing protein, at 4,247,203 to 4,247,709
_4013
HP15_4014: HP15_4014 - FAD dependent oxidoreductase, at 4,247,803 to 4,249,461
_4014
Position (kb) 4247
4248 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4246.445 kb on - strand, within HP15_4011 at 4246.458 kb on + strand, within HP15_4011 at 4246.543 kb on + strand, within HP15_4011 at 4246.551 kb on - strand, within HP15_4011 at 4246.694 kb on - strand, within HP15_4011 at 4246.696 kb on - strand, within HP15_4011 at 4246.802 kb on + strand at 4246.830 kb on + strand at 4246.836 kb on - strand at 4246.911 kb on + strand, within HP15_4012 at 4246.911 kb on + strand, within HP15_4012 at 4246.919 kb on - strand, within HP15_4012 at 4246.919 kb on - strand, within HP15_4012 at 4246.919 kb on - strand, within HP15_4012 at 4246.926 kb on - strand, within HP15_4012 at 4246.926 kb on - strand, within HP15_4012 at 4246.983 kb on - strand, within HP15_4012 at 4247.036 kb on + strand, within HP15_4012 at 4247.044 kb on - strand, within HP15_4012 at 4247.066 kb on - strand, within HP15_4012 at 4247.114 kb on + strand at 4247.136 kb on - strand at 4247.221 kb on - strand at 4247.251 kb on + strand at 4247.295 kb on + strand, within HP15_4013 at 4247.295 kb on + strand, within HP15_4013 at 4247.344 kb on - strand, within HP15_4013 at 4247.375 kb on + strand, within HP15_4013 at 4247.505 kb on + strand, within HP15_4013 at 4247.531 kb on - strand, within HP15_4013 at 4247.590 kb on - strand, within HP15_4013 at 4247.623 kb on - strand, within HP15_4013 at 4247.660 kb on + strand at 4247.853 kb on - strand at 4247.869 kb on - strand at 4247.897 kb on + strand at 4247.905 kb on - strand at 4247.931 kb on + strand at 4247.933 kb on - strand at 4247.939 kb on - strand at 4247.974 kb on + strand, within HP15_4014 at 4247.996 kb on + strand, within HP15_4014 at 4247.996 kb on - strand, within HP15_4014 at 4248.028 kb on - strand, within HP15_4014 at 4248.043 kb on - strand, within HP15_4014 at 4248.045 kb on + strand, within HP15_4014 at 4248.045 kb on + strand, within HP15_4014 at 4248.053 kb on - strand, within HP15_4014 at 4248.072 kb on - strand, within HP15_4014 at 4248.132 kb on + strand, within HP15_4014 at 4248.328 kb on + strand, within HP15_4014 at 4248.328 kb on + strand, within HP15_4014 at 4248.387 kb on + strand, within HP15_4014 at 4248.444 kb on - strand, within HP15_4014 at 4248.544 kb on + strand, within HP15_4014 at 4248.607 kb on - strand, within HP15_4014 at 4248.707 kb on + strand, within HP15_4014 at 4248.707 kb on + strand, within HP15_4014 at 4248.707 kb on + strand, within HP15_4014
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 4,246,445 - HP15_4011 0.16 +0.6 4,246,458 + HP15_4011 0.19 +1.3 4,246,543 + HP15_4011 0.40 +0.1 4,246,551 - HP15_4011 0.41 -0.4 4,246,694 - HP15_4011 0.75 -0.0 4,246,696 - HP15_4011 0.76 +0.7 4,246,802 + -1.3 4,246,830 + -0.2 4,246,836 - +0.0 4,246,911 + HP15_4012 0.14 +0.2 4,246,911 + HP15_4012 0.14 -0.1 4,246,919 - HP15_4012 0.17 +0.2 4,246,919 - HP15_4012 0.17 -0.0 4,246,919 - HP15_4012 0.17 -2.7 4,246,926 - HP15_4012 0.20 +0.5 4,246,926 - HP15_4012 0.20 +0.7 4,246,983 - HP15_4012 0.42 -1.3 4,247,036 + HP15_4012 0.62 -0.1 4,247,044 - HP15_4012 0.66 -1.8 4,247,066 - HP15_4012 0.74 -0.8 4,247,114 + +0.4 4,247,136 - -1.9 4,247,221 - -0.1 4,247,251 + -1.6 4,247,295 + HP15_4013 0.18 +0.1 4,247,295 + HP15_4013 0.18 +0.1 4,247,344 - HP15_4013 0.28 -1.3 4,247,375 + HP15_4013 0.34 -0.5 4,247,505 + HP15_4013 0.60 -0.3 4,247,531 - HP15_4013 0.65 -2.1 4,247,590 - HP15_4013 0.76 -2.2 4,247,623 - HP15_4013 0.83 +0.1 4,247,660 + -1.5 4,247,853 - -0.1 4,247,869 - +0.4 4,247,897 + +0.7 4,247,905 - +0.4 4,247,931 + -1.6 4,247,933 - -0.4 4,247,939 - -1.0 4,247,974 + HP15_4014 0.10 -0.1 4,247,996 + HP15_4014 0.12 +0.4 4,247,996 - HP15_4014 0.12 -1.1 4,248,028 - HP15_4014 0.14 -0.0 4,248,043 - HP15_4014 0.14 -0.1 4,248,045 + HP15_4014 0.15 +0.3 4,248,045 + HP15_4014 0.15 +0.9 4,248,053 - HP15_4014 0.15 -1.5 4,248,072 - HP15_4014 0.16 +0.1 4,248,132 + HP15_4014 0.20 -0.6 4,248,328 + HP15_4014 0.32 -1.3 4,248,328 + HP15_4014 0.32 +1.1 4,248,387 + HP15_4014 0.35 -1.6 4,248,444 - HP15_4014 0.39 -0.7 4,248,544 + HP15_4014 0.45 +2.6 4,248,607 - HP15_4014 0.48 -0.2 4,248,707 + HP15_4014 0.54 +0.8 4,248,707 + HP15_4014 0.54 +0.7 4,248,707 + HP15_4014 0.54 -1.8
Or see this region's nucleotide sequence