Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3898 and HP15_3899 are separated by 148 nucleotides HP15_3899 and HP15_3900 overlap by 4 nucleotides HP15_3900 and HP15_3901 are separated by 7 nucleotides
HP15_3898: HP15_3898 - conserved hypothetical protein, secreted, at 4,128,206 to 4,129,690
_3898
HP15_3899: HP15_3899 - RNA polymerase, sigma-24 subunit, ECF subfamily, at 4,129,839 to 4,130,402
_3899
HP15_3900: HP15_3900 - conserved hypothetical protein, at 4,130,399 to 4,131,100
_3900
HP15_3901: HP15_3901 - signal transduction protein, at 4,131,108 to 4,132,529
_3901
Position (kb) 4129
4130
4131 Strain fitness (log2 ratio) -2
-1
0
1 at 4128.842 kb on + strand, within HP15_3898 at 4128.860 kb on - strand, within HP15_3898 at 4128.911 kb on + strand, within HP15_3898 at 4128.924 kb on - strand, within HP15_3898 at 4128.975 kb on + strand, within HP15_3898 at 4128.981 kb on + strand, within HP15_3898 at 4128.987 kb on + strand, within HP15_3898 at 4128.987 kb on + strand, within HP15_3898 at 4129.096 kb on + strand, within HP15_3898 at 4129.240 kb on + strand, within HP15_3898 at 4129.250 kb on - strand, within HP15_3898 at 4129.256 kb on + strand, within HP15_3898 at 4129.264 kb on + strand, within HP15_3898 at 4129.345 kb on + strand, within HP15_3898 at 4129.546 kb on - strand at 4129.594 kb on - strand at 4129.640 kb on + strand at 4129.661 kb on - strand at 4129.750 kb on - strand at 4129.841 kb on + strand at 4129.926 kb on - strand, within HP15_3899 at 4129.954 kb on + strand, within HP15_3899 at 4129.962 kb on - strand, within HP15_3899 at 4130.070 kb on + strand, within HP15_3899 at 4130.075 kb on + strand, within HP15_3899 at 4130.183 kb on + strand, within HP15_3899 at 4130.188 kb on + strand, within HP15_3899 at 4130.191 kb on - strand, within HP15_3899 at 4130.191 kb on - strand, within HP15_3899 at 4130.212 kb on + strand, within HP15_3899 at 4130.221 kb on + strand, within HP15_3899 at 4130.292 kb on - strand, within HP15_3899 at 4130.376 kb on - strand at 4130.397 kb on - strand at 4130.619 kb on + strand, within HP15_3900 at 4130.650 kb on - strand, within HP15_3900 at 4130.668 kb on + strand, within HP15_3900 at 4130.668 kb on + strand, within HP15_3900 at 4130.676 kb on - strand, within HP15_3900 at 4130.700 kb on - strand, within HP15_3900 at 4130.794 kb on - strand, within HP15_3900 at 4130.979 kb on - strand, within HP15_3900 at 4130.989 kb on - strand, within HP15_3900 at 4130.998 kb on - strand, within HP15_3900 at 4131.110 kb on + strand at 4131.120 kb on + strand at 4131.120 kb on + strand at 4131.143 kb on - strand at 4131.176 kb on + strand at 4131.191 kb on + strand at 4131.196 kb on + strand at 4131.214 kb on + strand at 4131.222 kb on - strand at 4131.222 kb on - strand at 4131.328 kb on + strand, within HP15_3901 at 4131.395 kb on + strand, within HP15_3901
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 4,128,842 + HP15_3898 0.43 -1.6 4,128,860 - HP15_3898 0.44 -0.1 4,128,911 + HP15_3898 0.47 +0.2 4,128,924 - HP15_3898 0.48 +0.2 4,128,975 + HP15_3898 0.52 -0.7 4,128,981 + HP15_3898 0.52 +0.6 4,128,987 + HP15_3898 0.53 +0.5 4,128,987 + HP15_3898 0.53 -1.6 4,129,096 + HP15_3898 0.60 -0.4 4,129,240 + HP15_3898 0.70 +0.2 4,129,250 - HP15_3898 0.70 +1.4 4,129,256 + HP15_3898 0.71 +0.7 4,129,264 + HP15_3898 0.71 +0.1 4,129,345 + HP15_3898 0.77 -0.1 4,129,546 - +0.4 4,129,594 - -0.2 4,129,640 + -1.6 4,129,661 - -1.5 4,129,750 - +0.2 4,129,841 + +0.1 4,129,926 - HP15_3899 0.15 +0.6 4,129,954 + HP15_3899 0.20 +1.2 4,129,962 - HP15_3899 0.22 -0.8 4,130,070 + HP15_3899 0.41 -1.0 4,130,075 + HP15_3899 0.42 +0.9 4,130,183 + HP15_3899 0.61 -0.1 4,130,188 + HP15_3899 0.62 +1.1 4,130,191 - HP15_3899 0.62 +0.7 4,130,191 - HP15_3899 0.62 +0.4 4,130,212 + HP15_3899 0.66 +0.0 4,130,221 + HP15_3899 0.68 +0.2 4,130,292 - HP15_3899 0.80 +0.2 4,130,376 - -0.1 4,130,397 - +0.0 4,130,619 + HP15_3900 0.31 -0.1 4,130,650 - HP15_3900 0.36 -1.0 4,130,668 + HP15_3900 0.38 -2.1 4,130,668 + HP15_3900 0.38 -0.6 4,130,676 - HP15_3900 0.39 -0.4 4,130,700 - HP15_3900 0.43 +0.8 4,130,794 - HP15_3900 0.56 +0.0 4,130,979 - HP15_3900 0.83 +0.1 4,130,989 - HP15_3900 0.84 -1.8 4,130,998 - HP15_3900 0.85 -0.5 4,131,110 + -0.1 4,131,120 + -0.8 4,131,120 + -1.1 4,131,143 - +1.1 4,131,176 + -0.9 4,131,191 + +0.2 4,131,196 + +0.3 4,131,214 + -0.1 4,131,222 - -1.7 4,131,222 - -0.3 4,131,328 + HP15_3901 0.15 -0.5 4,131,395 + HP15_3901 0.20 +0.4
Or see this region's nucleotide sequence