Strain Fitness in Marinobacter adhaerens HP15 around HP15_3894

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3893 and HP15_3894 are separated by 131 nucleotidesHP15_3894 and HP15_3895 are separated by 17 nucleotides HP15_3893: HP15_3893 - amidase family protein, at 4,123,368 to 4,124,867 _3893 HP15_3894: HP15_3894 - conserved hypothetical protein, at 4,124,999 to 4,125,616 _3894 HP15_3895: HP15_3895 - conserved hypothetical protein, membrane, at 4,125,634 to 4,126,701 _3895 Position (kb) 4124 4125 4126Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4124.025 kb on + strand, within HP15_3893at 4124.025 kb on + strand, within HP15_3893at 4124.025 kb on - strand, within HP15_3893at 4124.033 kb on - strand, within HP15_3893at 4124.073 kb on + strand, within HP15_3893at 4124.105 kb on + strand, within HP15_3893at 4124.105 kb on + strand, within HP15_3893at 4124.113 kb on - strand, within HP15_3893at 4124.114 kb on - strand, within HP15_3893at 4124.162 kb on - strand, within HP15_3893at 4124.171 kb on + strand, within HP15_3893at 4124.205 kb on + strand, within HP15_3893at 4124.283 kb on + strand, within HP15_3893at 4124.283 kb on + strand, within HP15_3893at 4124.283 kb on + strand, within HP15_3893at 4124.283 kb on + strand, within HP15_3893at 4124.291 kb on - strand, within HP15_3893at 4124.291 kb on - strand, within HP15_3893at 4124.416 kb on - strand, within HP15_3893at 4124.481 kb on - strand, within HP15_3893at 4124.494 kb on + strand, within HP15_3893at 4124.518 kb on + strand, within HP15_3893at 4124.739 kb on + strandat 4124.810 kb on + strandat 4125.041 kb on - strandat 4125.049 kb on + strandat 4125.094 kb on - strand, within HP15_3894at 4125.094 kb on - strand, within HP15_3894at 4125.176 kb on + strand, within HP15_3894at 4125.214 kb on - strand, within HP15_3894at 4125.261 kb on - strand, within HP15_3894at 4125.308 kb on - strand, within HP15_3894at 4125.320 kb on + strand, within HP15_3894at 4125.383 kb on - strand, within HP15_3894at 4125.477 kb on + strand, within HP15_3894at 4125.526 kb on + strand, within HP15_3894at 4125.576 kb on + strandat 4125.610 kb on + strandat 4125.610 kb on + strandat 4125.637 kb on + strandat 4125.637 kb on + strandat 4125.637 kb on + strandat 4125.645 kb on - strandat 4125.645 kb on - strandat 4125.654 kb on + strandat 4125.657 kb on - strandat 4125.659 kb on + strandat 4125.659 kb on + strandat 4125.659 kb on + strandat 4125.659 kb on + strandat 4125.667 kb on - strandat 4125.737 kb on + strandat 4125.750 kb on - strand, within HP15_3895at 4125.794 kb on - strand, within HP15_3895at 4125.807 kb on - strand, within HP15_3895at 4125.969 kb on + strand, within HP15_3895at 4125.984 kb on + strand, within HP15_3895at 4126.023 kb on + strand, within HP15_3895at 4126.037 kb on - strand, within HP15_3895at 4126.054 kb on + strand, within HP15_3895at 4126.179 kb on + strand, within HP15_3895at 4126.189 kb on + strand, within HP15_3895at 4126.209 kb on - strand, within HP15_3895at 4126.306 kb on + strand, within HP15_3895at 4126.383 kb on - strand, within HP15_3895at 4126.411 kb on - strand, within HP15_3895at 4126.438 kb on - strand, within HP15_3895at 4126.565 kb on - strand, within HP15_3895at 4126.597 kb on + strandat 4126.608 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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4,124,025 + HP15_3893 0.44 -0.1
4,124,025 + HP15_3893 0.44 +0.4
4,124,025 - HP15_3893 0.44 +0.2
4,124,033 - HP15_3893 0.44 -1.3
4,124,073 + HP15_3893 0.47 +0.3
4,124,105 + HP15_3893 0.49 +0.6
4,124,105 + HP15_3893 0.49 +0.9
4,124,113 - HP15_3893 0.50 +0.6
4,124,114 - HP15_3893 0.50 +0.2
4,124,162 - HP15_3893 0.53 +0.1
4,124,171 + HP15_3893 0.54 -0.3
4,124,205 + HP15_3893 0.56 +0.8
4,124,283 + HP15_3893 0.61 -1.6
4,124,283 + HP15_3893 0.61 +0.2
4,124,283 + HP15_3893 0.61 -1.9
4,124,283 + HP15_3893 0.61 -1.8
4,124,291 - HP15_3893 0.62 -1.5
4,124,291 - HP15_3893 0.62 +0.6
4,124,416 - HP15_3893 0.70 +0.0
4,124,481 - HP15_3893 0.74 +1.2
4,124,494 + HP15_3893 0.75 +0.2
4,124,518 + HP15_3893 0.77 +0.1
4,124,739 + +0.1
4,124,810 + -1.8
4,125,041 - +0.1
4,125,049 + -1.1
4,125,094 - HP15_3894 0.15 -0.4
4,125,094 - HP15_3894 0.15 +0.2
4,125,176 + HP15_3894 0.29 -1.3
4,125,214 - HP15_3894 0.35 -3.6
4,125,261 - HP15_3894 0.42 -1.0
4,125,308 - HP15_3894 0.50 +0.1
4,125,320 + HP15_3894 0.52 -2.4
4,125,383 - HP15_3894 0.62 -1.9
4,125,477 + HP15_3894 0.77 -0.9
4,125,526 + HP15_3894 0.85 -0.0
4,125,576 + +0.3
4,125,610 + +0.0
4,125,610 + +0.3
4,125,637 + +0.1
4,125,637 + +0.2
4,125,637 + -0.4
4,125,645 - +0.3
4,125,645 - -0.4
4,125,654 + -0.4
4,125,657 - +0.3
4,125,659 + -0.3
4,125,659 + +0.4
4,125,659 + -2.2
4,125,659 + -0.8
4,125,667 - -0.7
4,125,737 + -0.7
4,125,750 - HP15_3895 0.11 +0.3
4,125,794 - HP15_3895 0.15 -2.3
4,125,807 - HP15_3895 0.16 -0.1
4,125,969 + HP15_3895 0.31 -0.1
4,125,984 + HP15_3895 0.33 -1.6
4,126,023 + HP15_3895 0.36 -0.6
4,126,037 - HP15_3895 0.38 -3.8
4,126,054 + HP15_3895 0.39 -0.6
4,126,179 + HP15_3895 0.51 -1.2
4,126,189 + HP15_3895 0.52 +0.5
4,126,209 - HP15_3895 0.54 -0.3
4,126,306 + HP15_3895 0.63 +0.6
4,126,383 - HP15_3895 0.70 +0.0
4,126,411 - HP15_3895 0.73 -0.3
4,126,438 - HP15_3895 0.75 +0.2
4,126,565 - HP15_3895 0.87 -1.0
4,126,597 + -1.9
4,126,608 - +0.2

Or see this region's nucleotide sequence