Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3744 and HP15_3745 are separated by 418 nucleotides HP15_3745 and HP15_3746 are separated by 70 nucleotides
HP15_3744: HP15_3744 - peptide deformylase, at 3,966,442 to 3,966,945
_3744
HP15_3745: HP15_3745 - protein containing LysM domain, at 3,967,364 to 3,968,380
_3745
HP15_3746: HP15_3746 - DNA protecting protein DprA, at 3,968,451 to 3,969,593
_3746
Position (kb)
3967
3968
3969 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3966.409 kb on - strand at 3966.409 kb on - strand at 3966.457 kb on - strand at 3966.962 kb on - strand at 3967.017 kb on + strand at 3967.025 kb on - strand at 3967.027 kb on - strand at 3967.035 kb on - strand at 3967.239 kb on - strand at 3967.316 kb on + strand at 3967.354 kb on + strand at 3967.362 kb on - strand at 3967.381 kb on - strand at 3967.402 kb on + strand at 3967.402 kb on + strand at 3967.402 kb on + strand at 3967.402 kb on + strand at 3967.402 kb on + strand at 3967.410 kb on - strand at 3967.410 kb on - strand at 3967.410 kb on - strand at 3967.410 kb on - strand at 3967.410 kb on - strand at 3967.410 kb on - strand at 3967.410 kb on - strand at 3967.456 kb on + strand at 3967.464 kb on - strand at 3967.474 kb on + strand, within HP15_3745 at 3967.474 kb on + strand, within HP15_3745 at 3967.484 kb on + strand, within HP15_3745 at 3967.576 kb on - strand, within HP15_3745 at 3967.608 kb on - strand, within HP15_3745 at 3967.626 kb on - strand, within HP15_3745 at 3967.674 kb on + strand, within HP15_3745 at 3967.751 kb on - strand, within HP15_3745 at 3967.751 kb on - strand, within HP15_3745 at 3967.755 kb on + strand, within HP15_3745 at 3967.763 kb on - strand, within HP15_3745 at 3967.793 kb on + strand, within HP15_3745 at 3967.801 kb on - strand, within HP15_3745 at 3967.815 kb on - strand, within HP15_3745 at 3967.923 kb on + strand, within HP15_3745 at 3967.923 kb on + strand, within HP15_3745 at 3967.931 kb on - strand, within HP15_3745 at 3967.931 kb on - strand, within HP15_3745 at 3967.931 kb on - strand, within HP15_3745 at 3967.931 kb on - strand, within HP15_3745 at 3967.931 kb on - strand, within HP15_3745 at 3967.931 kb on - strand, within HP15_3745 at 3967.931 kb on - strand, within HP15_3745 at 3967.931 kb on - strand, within HP15_3745 at 3967.931 kb on - strand, within HP15_3745 at 3967.938 kb on + strand, within HP15_3745 at 3967.938 kb on + strand, within HP15_3745 at 3967.938 kb on + strand, within HP15_3745 at 3967.946 kb on - strand, within HP15_3745 at 3967.976 kb on + strand, within HP15_3745 at 3967.988 kb on + strand, within HP15_3745 at 3967.991 kb on - strand, within HP15_3745 at 3967.998 kb on + strand, within HP15_3745 at 3968.001 kb on - strand, within HP15_3745 at 3968.056 kb on + strand, within HP15_3745 at 3968.138 kb on + strand, within HP15_3745 at 3968.181 kb on + strand, within HP15_3745 at 3968.215 kb on - strand, within HP15_3745 at 3968.258 kb on + strand, within HP15_3745 at 3968.301 kb on - strand at 3968.322 kb on + strand at 3968.406 kb on + strand at 3968.410 kb on + strand at 3968.500 kb on + strand at 3968.514 kb on - strand at 3968.514 kb on - strand at 3968.580 kb on - strand, within HP15_3746 at 3968.619 kb on + strand, within HP15_3746 at 3968.675 kb on - strand, within HP15_3746 at 3968.709 kb on + strand, within HP15_3746 at 3968.709 kb on + strand, within HP15_3746 at 3968.717 kb on - strand, within HP15_3746 at 3968.717 kb on - strand, within HP15_3746 at 3968.742 kb on - strand, within HP15_3746 at 3968.742 kb on - strand, within HP15_3746 at 3968.742 kb on - strand, within HP15_3746 at 3968.744 kb on + strand, within HP15_3746 at 3968.745 kb on + strand, within HP15_3746 at 3968.766 kb on + strand, within HP15_3746 at 3968.772 kb on + strand, within HP15_3746 at 3968.842 kb on - strand, within HP15_3746 at 3968.901 kb on - strand, within HP15_3746 at 3968.941 kb on - strand, within HP15_3746 at 3968.946 kb on - strand, within HP15_3746 at 3968.967 kb on + strand, within HP15_3746 at 3968.977 kb on - strand, within HP15_3746 at 3969.000 kb on - strand, within HP15_3746 at 3969.008 kb on + strand, within HP15_3746 at 3969.008 kb on + strand, within HP15_3746 at 3969.008 kb on + strand, within HP15_3746 at 3969.092 kb on + strand, within HP15_3746 at 3969.092 kb on + strand, within HP15_3746 at 3969.100 kb on - strand, within HP15_3746 at 3969.100 kb on - strand, within HP15_3746 at 3969.135 kb on + strand, within HP15_3746 at 3969.173 kb on + strand, within HP15_3746 at 3969.176 kb on - strand, within HP15_3746 at 3969.212 kb on - strand, within HP15_3746 at 3969.253 kb on + strand, within HP15_3746 at 3969.254 kb on - strand, within HP15_3746 at 3969.254 kb on - strand, within HP15_3746 at 3969.256 kb on - strand, within HP15_3746 at 3969.261 kb on - strand, within HP15_3746 at 3969.310 kb on + strand, within HP15_3746 at 3969.318 kb on - strand, within HP15_3746
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 3,966,409 - +0.5 3,966,409 - +2.4 3,966,457 - -1.8 3,966,962 - -0.6 3,967,017 + +1.1 3,967,025 - +0.2 3,967,027 - +0.2 3,967,035 - -0.5 3,967,239 - -2.6 3,967,316 + -2.8 3,967,354 + -0.7 3,967,362 - -0.6 3,967,381 - -1.2 3,967,402 + -1.4 3,967,402 + -0.7 3,967,402 + -0.5 3,967,402 + -0.4 3,967,402 + -0.6 3,967,410 - -0.4 3,967,410 - -0.7 3,967,410 - +0.4 3,967,410 - -1.4 3,967,410 - -2.0 3,967,410 - -1.3 3,967,410 - -2.8 3,967,456 + -1.9 3,967,464 - -1.6 3,967,474 + HP15_3745 0.11 -0.5 3,967,474 + HP15_3745 0.11 -1.2 3,967,484 + HP15_3745 0.12 -1.4 3,967,576 - HP15_3745 0.21 -1.8 3,967,608 - HP15_3745 0.24 -1.5 3,967,626 - HP15_3745 0.26 -1.4 3,967,674 + HP15_3745 0.30 +0.2 3,967,751 - HP15_3745 0.38 -0.8 3,967,751 - HP15_3745 0.38 -0.6 3,967,755 + HP15_3745 0.38 +0.4 3,967,763 - HP15_3745 0.39 -2.3 3,967,793 + HP15_3745 0.42 -0.9 3,967,801 - HP15_3745 0.43 -2.7 3,967,815 - HP15_3745 0.44 -0.7 3,967,923 + HP15_3745 0.55 -2.4 3,967,923 + HP15_3745 0.55 -1.6 3,967,931 - HP15_3745 0.56 -2.8 3,967,931 - HP15_3745 0.56 -3.2 3,967,931 - HP15_3745 0.56 -2.0 3,967,931 - HP15_3745 0.56 -0.1 3,967,931 - HP15_3745 0.56 -4.5 3,967,931 - HP15_3745 0.56 -0.8 3,967,931 - HP15_3745 0.56 -0.8 3,967,931 - HP15_3745 0.56 -1.6 3,967,931 - HP15_3745 0.56 -2.1 3,967,938 + HP15_3745 0.56 -1.9 3,967,938 + HP15_3745 0.56 -0.3 3,967,938 + HP15_3745 0.56 -1.8 3,967,946 - HP15_3745 0.57 -1.1 3,967,976 + HP15_3745 0.60 -1.0 3,967,988 + HP15_3745 0.61 -0.7 3,967,991 - HP15_3745 0.62 -0.2 3,967,998 + HP15_3745 0.62 -2.3 3,968,001 - HP15_3745 0.63 -1.0 3,968,056 + HP15_3745 0.68 -2.7 3,968,138 + HP15_3745 0.76 -2.9 3,968,181 + HP15_3745 0.80 +1.0 3,968,215 - HP15_3745 0.84 -1.6 3,968,258 + HP15_3745 0.88 -2.2 3,968,301 - -1.2 3,968,322 + -1.4 3,968,406 + -0.3 3,968,410 + +0.1 3,968,500 + +0.5 3,968,514 - -0.4 3,968,514 - -2.2 3,968,580 - HP15_3746 0.11 -0.2 3,968,619 + HP15_3746 0.15 +0.6 3,968,675 - HP15_3746 0.20 -1.3 3,968,709 + HP15_3746 0.23 +0.1 3,968,709 + HP15_3746 0.23 -1.2 3,968,717 - HP15_3746 0.23 +0.5 3,968,717 - HP15_3746 0.23 +1.4 3,968,742 - HP15_3746 0.25 -0.2 3,968,742 - HP15_3746 0.25 -0.3 3,968,742 - HP15_3746 0.25 +1.1 3,968,744 + HP15_3746 0.26 -0.3 3,968,745 + HP15_3746 0.26 -0.1 3,968,766 + HP15_3746 0.28 -0.1 3,968,772 + HP15_3746 0.28 -1.2 3,968,842 - HP15_3746 0.34 +0.2 3,968,901 - HP15_3746 0.39 +0.3 3,968,941 - HP15_3746 0.43 -1.2 3,968,946 - HP15_3746 0.43 +1.0 3,968,967 + HP15_3746 0.45 -1.6 3,968,977 - HP15_3746 0.46 +0.9 3,969,000 - HP15_3746 0.48 +0.1 3,969,008 + HP15_3746 0.49 +0.9 3,969,008 + HP15_3746 0.49 -0.1 3,969,008 + HP15_3746 0.49 +0.2 3,969,092 + HP15_3746 0.56 -2.2 3,969,092 + HP15_3746 0.56 +1.4 3,969,100 - HP15_3746 0.57 -0.9 3,969,100 - HP15_3746 0.57 -1.5 3,969,135 + HP15_3746 0.60 -0.1 3,969,173 + HP15_3746 0.63 +0.0 3,969,176 - HP15_3746 0.63 +2.3 3,969,212 - HP15_3746 0.67 +0.2 3,969,253 + HP15_3746 0.70 -0.1 3,969,254 - HP15_3746 0.70 +0.8 3,969,254 - HP15_3746 0.70 +0.1 3,969,256 - HP15_3746 0.70 -1.6 3,969,261 - HP15_3746 0.71 -0.2 3,969,310 + HP15_3746 0.75 -0.9 3,969,318 - HP15_3746 0.76 +0.7
Or see this region's nucleotide sequence