Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3690 and HP15_3691 are separated by 338 nucleotides HP15_3691 and HP15_3692 are separated by 228 nucleotides
HP15_3690: HP15_3690 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA, at 3,888,296 to 3,890,182
_3690
HP15_3691: HP15_3691 - phospholipid/glycerol acyltransferase, at 3,890,521 to 3,891,819
_3691
HP15_3692: HP15_3692 - EAL domain protein, at 3,892,048 to 3,893,313
_3692
Position (kb)
3890
3891
3892 Strain fitness (log2 ratio)
-2
-1
0
1 at 3890.308 kb on - strand at 3890.313 kb on - strand at 3890.313 kb on - strand at 3890.378 kb on + strand at 3890.628 kb on + strand at 3890.705 kb on + strand, within HP15_3691 at 3890.720 kb on + strand, within HP15_3691 at 3890.720 kb on + strand, within HP15_3691 at 3890.728 kb on - strand, within HP15_3691 at 3890.728 kb on - strand, within HP15_3691 at 3890.745 kb on + strand, within HP15_3691 at 3890.745 kb on + strand, within HP15_3691 at 3890.745 kb on + strand, within HP15_3691 at 3890.752 kb on + strand, within HP15_3691 at 3890.753 kb on - strand, within HP15_3691 at 3890.841 kb on - strand, within HP15_3691 at 3890.851 kb on + strand, within HP15_3691 at 3890.859 kb on - strand, within HP15_3691 at 3890.889 kb on + strand, within HP15_3691 at 3890.892 kb on - strand, within HP15_3691 at 3890.902 kb on - strand, within HP15_3691 at 3890.910 kb on + strand, within HP15_3691 at 3890.981 kb on - strand, within HP15_3691 at 3890.981 kb on - strand, within HP15_3691 at 3891.046 kb on - strand, within HP15_3691 at 3891.086 kb on + strand, within HP15_3691 at 3891.120 kb on - strand, within HP15_3691 at 3891.250 kb on + strand, within HP15_3691 at 3891.362 kb on + strand, within HP15_3691 at 3891.367 kb on + strand, within HP15_3691 at 3891.486 kb on + strand, within HP15_3691 at 3891.486 kb on + strand, within HP15_3691 at 3891.599 kb on - strand, within HP15_3691 at 3891.627 kb on + strand, within HP15_3691 at 3891.635 kb on - strand, within HP15_3691 at 3891.754 kb on - strand at 3891.922 kb on + strand at 3891.922 kb on + strand at 3891.930 kb on - strand at 3892.005 kb on + strand at 3892.038 kb on - strand at 3892.038 kb on - strand at 3892.038 kb on - strand at 3892.096 kb on + strand at 3892.192 kb on + strand, within HP15_3692 at 3892.192 kb on - strand, within HP15_3692 at 3892.445 kb on + strand, within HP15_3692 at 3892.455 kb on + strand, within HP15_3692 at 3892.528 kb on - strand, within HP15_3692 at 3892.588 kb on - strand, within HP15_3692 at 3892.662 kb on - strand, within HP15_3692 at 3892.662 kb on - strand, within HP15_3692 at 3892.811 kb on + strand, within HP15_3692 at 3892.819 kb on - strand, within HP15_3692
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 3,890,308 - -0.2 3,890,313 - +0.3 3,890,313 - +0.3 3,890,378 + +0.2 3,890,628 + -1.4 3,890,705 + HP15_3691 0.14 -2.1 3,890,720 + HP15_3691 0.15 -0.1 3,890,720 + HP15_3691 0.15 -1.6 3,890,728 - HP15_3691 0.16 +0.0 3,890,728 - HP15_3691 0.16 -0.6 3,890,745 + HP15_3691 0.17 +0.6 3,890,745 + HP15_3691 0.17 +0.1 3,890,745 + HP15_3691 0.17 +0.7 3,890,752 + HP15_3691 0.18 -2.1 3,890,753 - HP15_3691 0.18 +0.1 3,890,841 - HP15_3691 0.25 +0.7 3,890,851 + HP15_3691 0.25 +0.2 3,890,859 - HP15_3691 0.26 -0.0 3,890,889 + HP15_3691 0.28 -1.9 3,890,892 - HP15_3691 0.29 -1.6 3,890,902 - HP15_3691 0.29 +0.7 3,890,910 + HP15_3691 0.30 -1.2 3,890,981 - HP15_3691 0.35 -0.1 3,890,981 - HP15_3691 0.35 +0.1 3,891,046 - HP15_3691 0.40 -0.3 3,891,086 + HP15_3691 0.43 -1.3 3,891,120 - HP15_3691 0.46 -1.3 3,891,250 + HP15_3691 0.56 +0.2 3,891,362 + HP15_3691 0.65 +0.3 3,891,367 + HP15_3691 0.65 -2.4 3,891,486 + HP15_3691 0.74 -0.2 3,891,486 + HP15_3691 0.74 -0.9 3,891,599 - HP15_3691 0.83 +0.1 3,891,627 + HP15_3691 0.85 +0.0 3,891,635 - HP15_3691 0.86 -0.2 3,891,754 - -0.2 3,891,922 + +0.4 3,891,922 + +0.3 3,891,930 - +1.1 3,892,005 + -1.2 3,892,038 - +0.8 3,892,038 - -0.7 3,892,038 - +0.3 3,892,096 + +0.6 3,892,192 + HP15_3692 0.11 +0.0 3,892,192 - HP15_3692 0.11 -0.7 3,892,445 + HP15_3692 0.31 -0.1 3,892,455 + HP15_3692 0.32 +0.4 3,892,528 - HP15_3692 0.38 +0.2 3,892,588 - HP15_3692 0.43 +0.6 3,892,662 - HP15_3692 0.48 -0.0 3,892,662 - HP15_3692 0.48 +0.0 3,892,811 + HP15_3692 0.60 -0.8 3,892,819 - HP15_3692 0.61 -0.1
Or see this region's nucleotide sequence