Strain Fitness in Marinobacter adhaerens HP15 around HP15_3691

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3690 and HP15_3691 are separated by 338 nucleotidesHP15_3691 and HP15_3692 are separated by 228 nucleotides HP15_3690: HP15_3690 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA, at 3,888,296 to 3,890,182 _3690 HP15_3691: HP15_3691 - phospholipid/glycerol acyltransferase, at 3,890,521 to 3,891,819 _3691 HP15_3692: HP15_3692 - EAL domain protein, at 3,892,048 to 3,893,313 _3692 Position (kb) 3890 3891 3892Strain fitness (log2 ratio) -2 -1 0 1at 3890.308 kb on - strandat 3890.313 kb on - strandat 3890.313 kb on - strandat 3890.378 kb on + strandat 3890.628 kb on + strandat 3890.705 kb on + strand, within HP15_3691at 3890.720 kb on + strand, within HP15_3691at 3890.720 kb on + strand, within HP15_3691at 3890.728 kb on - strand, within HP15_3691at 3890.728 kb on - strand, within HP15_3691at 3890.745 kb on + strand, within HP15_3691at 3890.745 kb on + strand, within HP15_3691at 3890.745 kb on + strand, within HP15_3691at 3890.752 kb on + strand, within HP15_3691at 3890.753 kb on - strand, within HP15_3691at 3890.841 kb on - strand, within HP15_3691at 3890.851 kb on + strand, within HP15_3691at 3890.859 kb on - strand, within HP15_3691at 3890.889 kb on + strand, within HP15_3691at 3890.892 kb on - strand, within HP15_3691at 3890.902 kb on - strand, within HP15_3691at 3890.910 kb on + strand, within HP15_3691at 3890.981 kb on - strand, within HP15_3691at 3890.981 kb on - strand, within HP15_3691at 3891.046 kb on - strand, within HP15_3691at 3891.086 kb on + strand, within HP15_3691at 3891.120 kb on - strand, within HP15_3691at 3891.250 kb on + strand, within HP15_3691at 3891.362 kb on + strand, within HP15_3691at 3891.367 kb on + strand, within HP15_3691at 3891.486 kb on + strand, within HP15_3691at 3891.486 kb on + strand, within HP15_3691at 3891.599 kb on - strand, within HP15_3691at 3891.627 kb on + strand, within HP15_3691at 3891.635 kb on - strand, within HP15_3691at 3891.754 kb on - strandat 3891.922 kb on + strandat 3891.922 kb on + strandat 3891.930 kb on - strandat 3892.005 kb on + strandat 3892.038 kb on - strandat 3892.038 kb on - strandat 3892.038 kb on - strandat 3892.096 kb on + strandat 3892.192 kb on + strand, within HP15_3692at 3892.192 kb on - strand, within HP15_3692at 3892.445 kb on + strand, within HP15_3692at 3892.455 kb on + strand, within HP15_3692at 3892.528 kb on - strand, within HP15_3692at 3892.588 kb on - strand, within HP15_3692at 3892.662 kb on - strand, within HP15_3692at 3892.662 kb on - strand, within HP15_3692at 3892.811 kb on + strand, within HP15_3692at 3892.819 kb on - strand, within HP15_3692

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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3,890,308 - -0.2
3,890,313 - +0.3
3,890,313 - +0.3
3,890,378 + +0.2
3,890,628 + -1.4
3,890,705 + HP15_3691 0.14 -2.1
3,890,720 + HP15_3691 0.15 -0.1
3,890,720 + HP15_3691 0.15 -1.6
3,890,728 - HP15_3691 0.16 +0.0
3,890,728 - HP15_3691 0.16 -0.6
3,890,745 + HP15_3691 0.17 +0.6
3,890,745 + HP15_3691 0.17 +0.1
3,890,745 + HP15_3691 0.17 +0.7
3,890,752 + HP15_3691 0.18 -2.1
3,890,753 - HP15_3691 0.18 +0.1
3,890,841 - HP15_3691 0.25 +0.7
3,890,851 + HP15_3691 0.25 +0.2
3,890,859 - HP15_3691 0.26 -0.0
3,890,889 + HP15_3691 0.28 -1.9
3,890,892 - HP15_3691 0.29 -1.6
3,890,902 - HP15_3691 0.29 +0.7
3,890,910 + HP15_3691 0.30 -1.2
3,890,981 - HP15_3691 0.35 -0.1
3,890,981 - HP15_3691 0.35 +0.1
3,891,046 - HP15_3691 0.40 -0.3
3,891,086 + HP15_3691 0.43 -1.3
3,891,120 - HP15_3691 0.46 -1.3
3,891,250 + HP15_3691 0.56 +0.2
3,891,362 + HP15_3691 0.65 +0.3
3,891,367 + HP15_3691 0.65 -2.4
3,891,486 + HP15_3691 0.74 -0.2
3,891,486 + HP15_3691 0.74 -0.9
3,891,599 - HP15_3691 0.83 +0.1
3,891,627 + HP15_3691 0.85 +0.0
3,891,635 - HP15_3691 0.86 -0.2
3,891,754 - -0.2
3,891,922 + +0.4
3,891,922 + +0.3
3,891,930 - +1.1
3,892,005 + -1.2
3,892,038 - +0.8
3,892,038 - -0.7
3,892,038 - +0.3
3,892,096 + +0.6
3,892,192 + HP15_3692 0.11 +0.0
3,892,192 - HP15_3692 0.11 -0.7
3,892,445 + HP15_3692 0.31 -0.1
3,892,455 + HP15_3692 0.32 +0.4
3,892,528 - HP15_3692 0.38 +0.2
3,892,588 - HP15_3692 0.43 +0.6
3,892,662 - HP15_3692 0.48 -0.0
3,892,662 - HP15_3692 0.48 +0.0
3,892,811 + HP15_3692 0.60 -0.8
3,892,819 - HP15_3692 0.61 -0.1

Or see this region's nucleotide sequence