Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3616 and HP15_3617 are separated by 116 nucleotides HP15_3617 and HP15_3618 are separated by 24 nucleotides HP15_3618 and HP15_3619 are separated by 190 nucleotides
HP15_3616: HP15_3616 - tRNA/rRNA methyltransferase (SpoU), at 3,812,489 to 3,813,217
_3616
HP15_3617: HP15_3617 - protein containing transglutaminase-like domain, at 3,813,334 to 3,814,002
_3617
HP15_3618: HP15_3618 - periplasmic sugar-binding domain protein, at 3,814,027 to 3,815,181
_3618
HP15_3619: HP15_3619 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 3,815,372 to 3,816,958
_3619
Position (kb)
3814
3815
3816 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3813.058 kb on - strand, within HP15_3616 at 3813.063 kb on - strand, within HP15_3616 at 3813.065 kb on - strand, within HP15_3616 at 3813.124 kb on + strand, within HP15_3616 at 3813.130 kb on - strand, within HP15_3616 at 3813.159 kb on + strand at 3813.159 kb on - strand at 3813.211 kb on + strand at 3813.219 kb on - strand at 3813.335 kb on - strand at 3813.354 kb on - strand at 3813.401 kb on + strand, within HP15_3617 at 3813.401 kb on + strand, within HP15_3617 at 3813.401 kb on + strand, within HP15_3617 at 3813.409 kb on - strand, within HP15_3617 at 3813.730 kb on - strand, within HP15_3617 at 3813.822 kb on + strand, within HP15_3617 at 3813.937 kb on - strand at 3813.964 kb on + strand at 3813.982 kb on - strand at 3813.998 kb on + strand at 3814.006 kb on - strand at 3814.032 kb on - strand at 3814.047 kb on + strand at 3814.047 kb on + strand at 3814.052 kb on + strand at 3814.055 kb on - strand at 3814.055 kb on - strand at 3814.129 kb on - strand at 3814.332 kb on + strand, within HP15_3618 at 3814.412 kb on + strand, within HP15_3618 at 3814.494 kb on - strand, within HP15_3618 at 3814.504 kb on - strand, within HP15_3618 at 3814.537 kb on + strand, within HP15_3618 at 3814.537 kb on + strand, within HP15_3618 at 3814.537 kb on + strand, within HP15_3618 at 3814.537 kb on + strand, within HP15_3618 at 3814.545 kb on - strand, within HP15_3618 at 3814.545 kb on - strand, within HP15_3618 at 3814.545 kb on - strand, within HP15_3618 at 3814.657 kb on - strand, within HP15_3618 at 3814.676 kb on - strand, within HP15_3618 at 3814.790 kb on + strand, within HP15_3618 at 3814.798 kb on - strand, within HP15_3618 at 3814.798 kb on - strand, within HP15_3618 at 3814.843 kb on - strand, within HP15_3618 at 3814.852 kb on + strand, within HP15_3618 at 3814.859 kb on - strand, within HP15_3618 at 3814.861 kb on + strand, within HP15_3618 at 3814.935 kb on - strand, within HP15_3618 at 3814.942 kb on + strand, within HP15_3618 at 3814.950 kb on - strand, within HP15_3618 at 3814.986 kb on + strand, within HP15_3618 at 3814.987 kb on + strand, within HP15_3618 at 3815.062 kb on + strand, within HP15_3618 at 3815.129 kb on + strand at 3815.174 kb on + strand at 3815.194 kb on + strand at 3815.262 kb on + strand at 3815.270 kb on - strand at 3815.403 kb on - strand at 3815.426 kb on + strand at 3815.588 kb on - strand, within HP15_3619 at 3815.588 kb on - strand, within HP15_3619 at 3815.595 kb on + strand, within HP15_3619 at 3815.615 kb on - strand, within HP15_3619 at 3815.645 kb on + strand, within HP15_3619 at 3815.650 kb on + strand, within HP15_3619 at 3815.678 kb on - strand, within HP15_3619 at 3815.682 kb on + strand, within HP15_3619 at 3815.682 kb on + strand, within HP15_3619 at 3815.738 kb on - strand, within HP15_3619 at 3815.765 kb on - strand, within HP15_3619 at 3815.782 kb on - strand, within HP15_3619 at 3815.812 kb on + strand, within HP15_3619 at 3815.812 kb on + strand, within HP15_3619 at 3815.812 kb on + strand, within HP15_3619 at 3815.820 kb on - strand, within HP15_3619 at 3815.820 kb on - strand, within HP15_3619 at 3815.820 kb on - strand, within HP15_3619 at 3815.839 kb on + strand, within HP15_3619 at 3815.851 kb on + strand, within HP15_3619 at 3815.864 kb on - strand, within HP15_3619 at 3815.895 kb on + strand, within HP15_3619 at 3815.903 kb on - strand, within HP15_3619 at 3815.903 kb on - strand, within HP15_3619 at 3815.937 kb on + strand, within HP15_3619 at 3816.001 kb on + strand, within HP15_3619 at 3816.001 kb on + strand, within HP15_3619 at 3816.009 kb on - strand, within HP15_3619 at 3816.176 kb on - strand, within HP15_3619
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 3,813,058 - HP15_3616 0.78 -2.8 3,813,063 - HP15_3616 0.79 +0.5 3,813,065 - HP15_3616 0.79 -2.3 3,813,124 + HP15_3616 0.87 -0.2 3,813,130 - HP15_3616 0.88 -2.2 3,813,159 + -2.7 3,813,159 - -0.6 3,813,211 + +0.2 3,813,219 - -1.0 3,813,335 - +0.7 3,813,354 - -1.2 3,813,401 + HP15_3617 0.10 +0.2 3,813,401 + HP15_3617 0.10 -0.2 3,813,401 + HP15_3617 0.10 +0.7 3,813,409 - HP15_3617 0.11 +0.9 3,813,730 - HP15_3617 0.59 +0.0 3,813,822 + HP15_3617 0.73 +1.5 3,813,937 - -0.2 3,813,964 + -0.9 3,813,982 - -1.7 3,813,998 + +0.2 3,814,006 - +0.1 3,814,032 - -0.2 3,814,047 + -1.2 3,814,047 + +1.1 3,814,052 + +0.2 3,814,055 - -0.1 3,814,055 - +0.2 3,814,129 - +0.2 3,814,332 + HP15_3618 0.26 +0.5 3,814,412 + HP15_3618 0.33 +0.8 3,814,494 - HP15_3618 0.40 +0.2 3,814,504 - HP15_3618 0.41 -0.2 3,814,537 + HP15_3618 0.44 +1.5 3,814,537 + HP15_3618 0.44 +0.6 3,814,537 + HP15_3618 0.44 +0.3 3,814,537 + HP15_3618 0.44 +0.1 3,814,545 - HP15_3618 0.45 +1.2 3,814,545 - HP15_3618 0.45 +0.4 3,814,545 - HP15_3618 0.45 +0.7 3,814,657 - HP15_3618 0.55 -0.1 3,814,676 - HP15_3618 0.56 -0.9 3,814,790 + HP15_3618 0.66 -0.3 3,814,798 - HP15_3618 0.67 +0.4 3,814,798 - HP15_3618 0.67 -0.3 3,814,843 - HP15_3618 0.71 +0.7 3,814,852 + HP15_3618 0.71 +0.1 3,814,859 - HP15_3618 0.72 -0.6 3,814,861 + HP15_3618 0.72 +0.7 3,814,935 - HP15_3618 0.79 -0.8 3,814,942 + HP15_3618 0.79 +0.7 3,814,950 - HP15_3618 0.80 +1.0 3,814,986 + HP15_3618 0.83 +0.0 3,814,987 + HP15_3618 0.83 -0.2 3,815,062 + HP15_3618 0.90 +0.7 3,815,129 + -0.1 3,815,174 + +0.2 3,815,194 + +0.4 3,815,262 + -0.5 3,815,270 - -1.4 3,815,403 - -1.7 3,815,426 + +0.2 3,815,588 - HP15_3619 0.14 +0.1 3,815,588 - HP15_3619 0.14 -1.0 3,815,595 + HP15_3619 0.14 -3.1 3,815,615 - HP15_3619 0.15 -2.1 3,815,645 + HP15_3619 0.17 -1.1 3,815,650 + HP15_3619 0.18 +0.0 3,815,678 - HP15_3619 0.19 +0.2 3,815,682 + HP15_3619 0.20 -0.1 3,815,682 + HP15_3619 0.20 -0.1 3,815,738 - HP15_3619 0.23 +0.3 3,815,765 - HP15_3619 0.25 +1.0 3,815,782 - HP15_3619 0.26 -0.7 3,815,812 + HP15_3619 0.28 -0.1 3,815,812 + HP15_3619 0.28 -0.4 3,815,812 + HP15_3619 0.28 -0.6 3,815,820 - HP15_3619 0.28 +0.7 3,815,820 - HP15_3619 0.28 +0.4 3,815,820 - HP15_3619 0.28 -1.6 3,815,839 + HP15_3619 0.29 -1.2 3,815,851 + HP15_3619 0.30 +0.4 3,815,864 - HP15_3619 0.31 +0.3 3,815,895 + HP15_3619 0.33 +0.4 3,815,903 - HP15_3619 0.33 -1.0 3,815,903 - HP15_3619 0.33 -1.0 3,815,937 + HP15_3619 0.36 +0.4 3,816,001 + HP15_3619 0.40 +0.4 3,816,001 + HP15_3619 0.40 -0.6 3,816,009 - HP15_3619 0.40 +0.2 3,816,176 - HP15_3619 0.51 +0.2
Or see this region's nucleotide sequence