Strain Fitness in Marinobacter adhaerens HP15 around HP15_3618

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3616 and HP15_3617 are separated by 116 nucleotidesHP15_3617 and HP15_3618 are separated by 24 nucleotidesHP15_3618 and HP15_3619 are separated by 190 nucleotides HP15_3616: HP15_3616 - tRNA/rRNA methyltransferase (SpoU), at 3,812,489 to 3,813,217 _3616 HP15_3617: HP15_3617 - protein containing transglutaminase-like domain, at 3,813,334 to 3,814,002 _3617 HP15_3618: HP15_3618 - periplasmic sugar-binding domain protein, at 3,814,027 to 3,815,181 _3618 HP15_3619: HP15_3619 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 3,815,372 to 3,816,958 _3619 Position (kb) 3814 3815 3816Strain fitness (log2 ratio) -3 -2 -1 0 1at 3813.058 kb on - strand, within HP15_3616at 3813.063 kb on - strand, within HP15_3616at 3813.065 kb on - strand, within HP15_3616at 3813.124 kb on + strand, within HP15_3616at 3813.130 kb on - strand, within HP15_3616at 3813.159 kb on + strandat 3813.159 kb on - strandat 3813.211 kb on + strandat 3813.219 kb on - strandat 3813.335 kb on - strandat 3813.354 kb on - strandat 3813.401 kb on + strand, within HP15_3617at 3813.401 kb on + strand, within HP15_3617at 3813.401 kb on + strand, within HP15_3617at 3813.409 kb on - strand, within HP15_3617at 3813.730 kb on - strand, within HP15_3617at 3813.822 kb on + strand, within HP15_3617at 3813.937 kb on - strandat 3813.964 kb on + strandat 3813.982 kb on - strandat 3813.998 kb on + strandat 3814.006 kb on - strandat 3814.032 kb on - strandat 3814.047 kb on + strandat 3814.047 kb on + strandat 3814.052 kb on + strandat 3814.055 kb on - strandat 3814.055 kb on - strandat 3814.129 kb on - strandat 3814.332 kb on + strand, within HP15_3618at 3814.412 kb on + strand, within HP15_3618at 3814.494 kb on - strand, within HP15_3618at 3814.504 kb on - strand, within HP15_3618at 3814.537 kb on + strand, within HP15_3618at 3814.537 kb on + strand, within HP15_3618at 3814.537 kb on + strand, within HP15_3618at 3814.537 kb on + strand, within HP15_3618at 3814.545 kb on - strand, within HP15_3618at 3814.545 kb on - strand, within HP15_3618at 3814.545 kb on - strand, within HP15_3618at 3814.657 kb on - strand, within HP15_3618at 3814.676 kb on - strand, within HP15_3618at 3814.790 kb on + strand, within HP15_3618at 3814.798 kb on - strand, within HP15_3618at 3814.798 kb on - strand, within HP15_3618at 3814.843 kb on - strand, within HP15_3618at 3814.852 kb on + strand, within HP15_3618at 3814.859 kb on - strand, within HP15_3618at 3814.861 kb on + strand, within HP15_3618at 3814.935 kb on - strand, within HP15_3618at 3814.942 kb on + strand, within HP15_3618at 3814.950 kb on - strand, within HP15_3618at 3814.986 kb on + strand, within HP15_3618at 3814.987 kb on + strand, within HP15_3618at 3815.062 kb on + strand, within HP15_3618at 3815.129 kb on + strandat 3815.174 kb on + strandat 3815.194 kb on + strandat 3815.262 kb on + strandat 3815.270 kb on - strandat 3815.403 kb on - strandat 3815.426 kb on + strandat 3815.588 kb on - strand, within HP15_3619at 3815.588 kb on - strand, within HP15_3619at 3815.595 kb on + strand, within HP15_3619at 3815.615 kb on - strand, within HP15_3619at 3815.645 kb on + strand, within HP15_3619at 3815.650 kb on + strand, within HP15_3619at 3815.678 kb on - strand, within HP15_3619at 3815.682 kb on + strand, within HP15_3619at 3815.682 kb on + strand, within HP15_3619at 3815.738 kb on - strand, within HP15_3619at 3815.765 kb on - strand, within HP15_3619at 3815.782 kb on - strand, within HP15_3619at 3815.812 kb on + strand, within HP15_3619at 3815.812 kb on + strand, within HP15_3619at 3815.812 kb on + strand, within HP15_3619at 3815.820 kb on - strand, within HP15_3619at 3815.820 kb on - strand, within HP15_3619at 3815.820 kb on - strand, within HP15_3619at 3815.839 kb on + strand, within HP15_3619at 3815.851 kb on + strand, within HP15_3619at 3815.864 kb on - strand, within HP15_3619at 3815.895 kb on + strand, within HP15_3619at 3815.903 kb on - strand, within HP15_3619at 3815.903 kb on - strand, within HP15_3619at 3815.937 kb on + strand, within HP15_3619at 3816.001 kb on + strand, within HP15_3619at 3816.001 kb on + strand, within HP15_3619at 3816.009 kb on - strand, within HP15_3619at 3816.176 kb on - strand, within HP15_3619

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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3,813,058 - HP15_3616 0.78 -2.8
3,813,063 - HP15_3616 0.79 +0.5
3,813,065 - HP15_3616 0.79 -2.3
3,813,124 + HP15_3616 0.87 -0.2
3,813,130 - HP15_3616 0.88 -2.2
3,813,159 + -2.7
3,813,159 - -0.6
3,813,211 + +0.2
3,813,219 - -1.0
3,813,335 - +0.7
3,813,354 - -1.2
3,813,401 + HP15_3617 0.10 +0.2
3,813,401 + HP15_3617 0.10 -0.2
3,813,401 + HP15_3617 0.10 +0.7
3,813,409 - HP15_3617 0.11 +0.9
3,813,730 - HP15_3617 0.59 +0.0
3,813,822 + HP15_3617 0.73 +1.5
3,813,937 - -0.2
3,813,964 + -0.9
3,813,982 - -1.7
3,813,998 + +0.2
3,814,006 - +0.1
3,814,032 - -0.2
3,814,047 + -1.2
3,814,047 + +1.1
3,814,052 + +0.2
3,814,055 - -0.1
3,814,055 - +0.2
3,814,129 - +0.2
3,814,332 + HP15_3618 0.26 +0.5
3,814,412 + HP15_3618 0.33 +0.8
3,814,494 - HP15_3618 0.40 +0.2
3,814,504 - HP15_3618 0.41 -0.2
3,814,537 + HP15_3618 0.44 +1.5
3,814,537 + HP15_3618 0.44 +0.6
3,814,537 + HP15_3618 0.44 +0.3
3,814,537 + HP15_3618 0.44 +0.1
3,814,545 - HP15_3618 0.45 +1.2
3,814,545 - HP15_3618 0.45 +0.4
3,814,545 - HP15_3618 0.45 +0.7
3,814,657 - HP15_3618 0.55 -0.1
3,814,676 - HP15_3618 0.56 -0.9
3,814,790 + HP15_3618 0.66 -0.3
3,814,798 - HP15_3618 0.67 +0.4
3,814,798 - HP15_3618 0.67 -0.3
3,814,843 - HP15_3618 0.71 +0.7
3,814,852 + HP15_3618 0.71 +0.1
3,814,859 - HP15_3618 0.72 -0.6
3,814,861 + HP15_3618 0.72 +0.7
3,814,935 - HP15_3618 0.79 -0.8
3,814,942 + HP15_3618 0.79 +0.7
3,814,950 - HP15_3618 0.80 +1.0
3,814,986 + HP15_3618 0.83 +0.0
3,814,987 + HP15_3618 0.83 -0.2
3,815,062 + HP15_3618 0.90 +0.7
3,815,129 + -0.1
3,815,174 + +0.2
3,815,194 + +0.4
3,815,262 + -0.5
3,815,270 - -1.4
3,815,403 - -1.7
3,815,426 + +0.2
3,815,588 - HP15_3619 0.14 +0.1
3,815,588 - HP15_3619 0.14 -1.0
3,815,595 + HP15_3619 0.14 -3.1
3,815,615 - HP15_3619 0.15 -2.1
3,815,645 + HP15_3619 0.17 -1.1
3,815,650 + HP15_3619 0.18 +0.0
3,815,678 - HP15_3619 0.19 +0.2
3,815,682 + HP15_3619 0.20 -0.1
3,815,682 + HP15_3619 0.20 -0.1
3,815,738 - HP15_3619 0.23 +0.3
3,815,765 - HP15_3619 0.25 +1.0
3,815,782 - HP15_3619 0.26 -0.7
3,815,812 + HP15_3619 0.28 -0.1
3,815,812 + HP15_3619 0.28 -0.4
3,815,812 + HP15_3619 0.28 -0.6
3,815,820 - HP15_3619 0.28 +0.7
3,815,820 - HP15_3619 0.28 +0.4
3,815,820 - HP15_3619 0.28 -1.6
3,815,839 + HP15_3619 0.29 -1.2
3,815,851 + HP15_3619 0.30 +0.4
3,815,864 - HP15_3619 0.31 +0.3
3,815,895 + HP15_3619 0.33 +0.4
3,815,903 - HP15_3619 0.33 -1.0
3,815,903 - HP15_3619 0.33 -1.0
3,815,937 + HP15_3619 0.36 +0.4
3,816,001 + HP15_3619 0.40 +0.4
3,816,001 + HP15_3619 0.40 -0.6
3,816,009 - HP15_3619 0.40 +0.2
3,816,176 - HP15_3619 0.51 +0.2

Or see this region's nucleotide sequence