Strain Fitness in Marinobacter adhaerens HP15 around HP15_3337

Experiment: m.b. Choline chloride 358.1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3336 and HP15_3337 are separated by 157 nucleotidesHP15_3337 and HP15_3338 are separated by 272 nucleotidesHP15_3338 and HP15_3339 are separated by 2 nucleotides HP15_3336: HP15_3336 - lipase chaperone, at 3,498,158 to 3,499,180 _3336 HP15_3337: HP15_3337 - delta-aminolevulinic acid dehydratase, at 3,499,338 to 3,499,559 _3337 HP15_3338: HP15_3338 - transcriptional regulator, TetR family, at 3,499,832 to 3,500,464 _3338 HP15_3339: HP15_3339 - acyl-CoA dehydrogenase domain protein, at 3,500,467 to 3,502,167 _3339 Position (kb) 3499 3500Strain fitness (log2 ratio) -2 -1 0 1 2at 3498.435 kb on - strand, within HP15_3336at 3498.455 kb on - strand, within HP15_3336at 3498.473 kb on - strand, within HP15_3336at 3498.630 kb on - strand, within HP15_3336at 3498.653 kb on - strand, within HP15_3336at 3498.671 kb on + strand, within HP15_3336at 3498.707 kb on + strand, within HP15_3336at 3498.759 kb on - strand, within HP15_3336at 3498.926 kb on - strand, within HP15_3336at 3498.976 kb on - strand, within HP15_3336at 3499.032 kb on + strand, within HP15_3336at 3499.112 kb on - strandat 3499.142 kb on - strandat 3499.277 kb on + strandat 3499.327 kb on + strandat 3499.404 kb on - strand, within HP15_3337at 3499.470 kb on - strand, within HP15_3337at 3499.512 kb on + strand, within HP15_3337at 3499.529 kb on + strand, within HP15_3337at 3499.529 kb on + strand, within HP15_3337at 3499.529 kb on + strand, within HP15_3337at 3499.537 kb on - strandat 3499.537 kb on - strandat 3499.638 kb on - strandat 3499.899 kb on + strand, within HP15_3338at 3500.001 kb on + strand, within HP15_3338at 3500.007 kb on + strand, within HP15_3338at 3500.072 kb on + strand, within HP15_3338at 3500.080 kb on - strand, within HP15_3338at 3500.086 kb on - strand, within HP15_3338at 3500.229 kb on + strand, within HP15_3338at 3500.297 kb on + strand, within HP15_3338at 3500.305 kb on - strand, within HP15_3338

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
remove
3,498,435 - HP15_3336 0.27 +0.1
3,498,455 - HP15_3336 0.29 +1.1
3,498,473 - HP15_3336 0.31 +0.5
3,498,630 - HP15_3336 0.46 +0.8
3,498,653 - HP15_3336 0.48 +0.4
3,498,671 + HP15_3336 0.50 -0.6
3,498,707 + HP15_3336 0.54 -0.2
3,498,759 - HP15_3336 0.59 +0.0
3,498,926 - HP15_3336 0.75 -1.9
3,498,976 - HP15_3336 0.80 +0.1
3,499,032 + HP15_3336 0.85 +0.5
3,499,112 - +0.2
3,499,142 - +0.1
3,499,277 + +1.2
3,499,327 + +1.4
3,499,404 - HP15_3337 0.30 -0.8
3,499,470 - HP15_3337 0.59 +0.9
3,499,512 + HP15_3337 0.78 +1.6
3,499,529 + HP15_3337 0.86 +0.6
3,499,529 + HP15_3337 0.86 +1.6
3,499,529 + HP15_3337 0.86 +1.9
3,499,537 - +0.7
3,499,537 - +0.3
3,499,638 - +0.4
3,499,899 + HP15_3338 0.11 -1.0
3,500,001 + HP15_3338 0.27 +0.1
3,500,007 + HP15_3338 0.28 +0.3
3,500,072 + HP15_3338 0.38 -2.3
3,500,080 - HP15_3338 0.39 -0.9
3,500,086 - HP15_3338 0.40 -0.5
3,500,229 + HP15_3338 0.63 -0.4
3,500,297 + HP15_3338 0.73 -0.9
3,500,305 - HP15_3338 0.75 -1.2

Or see this region's nucleotide sequence