Strain Fitness in Marinobacter adhaerens HP15 around HP15_3203

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3202 and HP15_3203 are separated by 6 nucleotidesHP15_3203 and HP15_3204 are separated by 26 nucleotidesHP15_3204 and HP15_3205 are separated by 136 nucleotides HP15_3202: HP15_3202 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 3,354,674 to 3,355,957 _3202 HP15_3203: HP15_3203 - proline aminopeptidase P II, at 3,355,964 to 3,357,283 _3203 HP15_3204: HP15_3204 - yecA family protein, at 3,357,310 to 3,357,909 _3204 HP15_3205: HP15_3205 - conserved hypothetical protein, secreted, at 3,358,046 to 3,358,609 _3205 Position (kb) 3355 3356 3357 3358Strain fitness (log2 ratio) -2 -1 0 1at 3355.957 kb on + strandat 3356.052 kb on - strandat 3356.095 kb on + strandat 3356.113 kb on - strand, within HP15_3203at 3356.123 kb on - strand, within HP15_3203at 3356.123 kb on - strand, within HP15_3203at 3356.217 kb on - strand, within HP15_3203at 3356.430 kb on + strand, within HP15_3203at 3356.517 kb on - strand, within HP15_3203at 3356.533 kb on - strand, within HP15_3203at 3356.540 kb on + strand, within HP15_3203at 3356.600 kb on - strand, within HP15_3203at 3356.606 kb on - strand, within HP15_3203at 3356.606 kb on - strand, within HP15_3203at 3356.606 kb on - strand, within HP15_3203at 3356.620 kb on + strand, within HP15_3203at 3356.628 kb on - strand, within HP15_3203at 3356.651 kb on - strand, within HP15_3203at 3356.651 kb on - strand, within HP15_3203at 3356.716 kb on + strand, within HP15_3203at 3356.860 kb on - strand, within HP15_3203at 3356.905 kb on - strand, within HP15_3203at 3357.045 kb on + strand, within HP15_3203at 3357.107 kb on - strand, within HP15_3203at 3357.220 kb on - strandat 3357.308 kb on + strandat 3357.352 kb on + strandat 3357.565 kb on + strand, within HP15_3204at 3357.593 kb on - strand, within HP15_3204at 3357.648 kb on - strand, within HP15_3204at 3357.832 kb on + strand, within HP15_3204at 3357.943 kb on - strandat 3357.964 kb on + strandat 3357.972 kb on - strandat 3358.145 kb on + strand, within HP15_3205at 3358.200 kb on - strand, within HP15_3205at 3358.264 kb on + strand, within HP15_3205

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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3,355,957 + -0.0
3,356,052 - +0.3
3,356,095 + -1.2
3,356,113 - HP15_3203 0.11 +0.3
3,356,123 - HP15_3203 0.12 +0.4
3,356,123 - HP15_3203 0.12 +1.3
3,356,217 - HP15_3203 0.19 -0.9
3,356,430 + HP15_3203 0.35 -0.2
3,356,517 - HP15_3203 0.42 -0.1
3,356,533 - HP15_3203 0.43 +0.3
3,356,540 + HP15_3203 0.44 -0.7
3,356,600 - HP15_3203 0.48 -0.4
3,356,606 - HP15_3203 0.49 +0.7
3,356,606 - HP15_3203 0.49 -1.2
3,356,606 - HP15_3203 0.49 -0.0
3,356,620 + HP15_3203 0.50 -2.2
3,356,628 - HP15_3203 0.50 +1.1
3,356,651 - HP15_3203 0.52 -0.1
3,356,651 - HP15_3203 0.52 -1.4
3,356,716 + HP15_3203 0.57 -1.3
3,356,860 - HP15_3203 0.68 -0.0
3,356,905 - HP15_3203 0.71 -0.4
3,357,045 + HP15_3203 0.82 -0.6
3,357,107 - HP15_3203 0.87 +0.5
3,357,220 - +1.0
3,357,308 + -0.6
3,357,352 + -1.4
3,357,565 + HP15_3204 0.42 -0.6
3,357,593 - HP15_3204 0.47 -2.6
3,357,648 - HP15_3204 0.56 -2.2
3,357,832 + HP15_3204 0.87 -2.4
3,357,943 - -2.2
3,357,964 + -0.6
3,357,972 - +0.4
3,358,145 + HP15_3205 0.18 -1.9
3,358,200 - HP15_3205 0.27 +0.4
3,358,264 + HP15_3205 0.39 -1.9

Or see this region's nucleotide sequence