Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3125 and HP15_3126 are separated by 58 nucleotides HP15_3126 and HP15_3127 are separated by 33 nucleotides HP15_3127 and HP15_3128 are separated by 11 nucleotides HP15_3128 and HP15_3129 are separated by 112 nucleotides
HP15_3125: HP15_3125 - sulfite oxidase protein, at 3,278,346 to 3,279,572
_3125
HP15_3126: HP15_3126 - cytochrome c protein, at 3,279,631 to 3,279,951
_3126
HP15_3127: HP15_3127 - methionine sulfoxide reductase B, at 3,279,985 to 3,280,410
_3127
HP15_3128: HP15_3128 - methionine sulfoxide reductase A, at 3,280,422 to 3,281,075
_3128
HP15_3129: HP15_3129 - chromate transporter, at 3,281,188 to 3,282,369
_3129
Position (kb)
3279
3280
3281 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3278.985 kb on + strand, within HP15_3125 at 3279.047 kb on - strand, within HP15_3125 at 3279.052 kb on - strand, within HP15_3125 at 3279.084 kb on + strand, within HP15_3125 at 3279.155 kb on + strand, within HP15_3125 at 3279.233 kb on + strand, within HP15_3125 at 3279.382 kb on + strand, within HP15_3125 at 3279.416 kb on + strand, within HP15_3125 at 3279.493 kb on - strand at 3279.612 kb on - strand at 3279.646 kb on + strand at 3279.654 kb on - strand at 3279.725 kb on - strand, within HP15_3126 at 3279.738 kb on + strand, within HP15_3126 at 3279.755 kb on + strand, within HP15_3126 at 3279.755 kb on + strand, within HP15_3126 at 3279.763 kb on - strand, within HP15_3126 at 3279.834 kb on + strand, within HP15_3126 at 3279.862 kb on - strand, within HP15_3126 at 3280.025 kb on - strand at 3280.058 kb on + strand, within HP15_3127 at 3280.216 kb on + strand, within HP15_3127 at 3280.522 kb on + strand, within HP15_3128 at 3280.603 kb on - strand, within HP15_3128 at 3280.715 kb on - strand, within HP15_3128 at 3280.715 kb on - strand, within HP15_3128 at 3280.725 kb on - strand, within HP15_3128 at 3280.762 kb on + strand, within HP15_3128 at 3280.809 kb on + strand, within HP15_3128 at 3280.815 kb on - strand, within HP15_3128 at 3280.971 kb on - strand, within HP15_3128 at 3280.993 kb on - strand, within HP15_3128 at 3281.015 kb on - strand at 3281.089 kb on - strand at 3281.101 kb on + strand at 3281.154 kb on - strand at 3281.382 kb on + strand, within HP15_3129
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 3,278,985 + HP15_3125 0.52 +0.7 3,279,047 - HP15_3125 0.57 -0.5 3,279,052 - HP15_3125 0.58 +0.1 3,279,084 + HP15_3125 0.60 +1.0 3,279,155 + HP15_3125 0.66 -1.5 3,279,233 + HP15_3125 0.72 -0.3 3,279,382 + HP15_3125 0.84 -0.9 3,279,416 + HP15_3125 0.87 +0.3 3,279,493 - +0.3 3,279,612 - +0.2 3,279,646 + +0.8 3,279,654 - +0.4 3,279,725 - HP15_3126 0.29 -0.1 3,279,738 + HP15_3126 0.33 -1.6 3,279,755 + HP15_3126 0.39 -0.4 3,279,755 + HP15_3126 0.39 -1.4 3,279,763 - HP15_3126 0.41 +0.3 3,279,834 + HP15_3126 0.63 -1.7 3,279,862 - HP15_3126 0.72 -0.1 3,280,025 - -1.4 3,280,058 + HP15_3127 0.17 -0.4 3,280,216 + HP15_3127 0.54 -1.9 3,280,522 + HP15_3128 0.15 -1.2 3,280,603 - HP15_3128 0.28 +0.2 3,280,715 - HP15_3128 0.45 -0.8 3,280,715 - HP15_3128 0.45 -0.1 3,280,725 - HP15_3128 0.46 -1.5 3,280,762 + HP15_3128 0.52 -3.5 3,280,809 + HP15_3128 0.59 -0.6 3,280,815 - HP15_3128 0.60 -0.1 3,280,971 - HP15_3128 0.84 -2.0 3,280,993 - HP15_3128 0.87 +0.2 3,281,015 - -0.0 3,281,089 - +1.5 3,281,101 + -1.3 3,281,154 - -1.3 3,281,382 + HP15_3129 0.16 -0.1
Or see this region's nucleotide sequence