Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_308 and HP15_309 are separated by 8 nucleotides HP15_309 and HP15_310 are separated by 151 nucleotides
HP15_308: HP15_308 - oxidative stress regulatory protein OxyR, at 298,572 to 299,531
_308
HP15_309: HP15_309 - DNA helicase, ATP-dependent, RecG, at 299,540 to 301,615
_309
HP15_310: HP15_310 - signal transduction protein, at 301,767 to 303,131
_310
Position (kb) 299
300
301
302 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 298.571 kb on - strand at 298.576 kb on - strand at 298.576 kb on - strand at 298.677 kb on - strand, within HP15_308 at 298.810 kb on - strand, within HP15_308 at 298.811 kb on - strand, within HP15_308 at 298.870 kb on - strand, within HP15_308 at 298.890 kb on - strand, within HP15_308 at 298.949 kb on + strand, within HP15_308 at 298.957 kb on - strand, within HP15_308 at 299.173 kb on - strand, within HP15_308 at 299.301 kb on - strand, within HP15_308 at 299.401 kb on - strand, within HP15_308 at 299.435 kb on + strand, within HP15_308 at 299.435 kb on + strand, within HP15_308 at 299.506 kb on + strand at 299.572 kb on + strand at 299.572 kb on + strand at 299.572 kb on + strand at 299.580 kb on - strand at 299.580 kb on - strand at 299.644 kb on + strand at 299.841 kb on + strand, within HP15_309 at 299.914 kb on - strand, within HP15_309 at 299.914 kb on - strand, within HP15_309 at 299.947 kb on + strand, within HP15_309 at 299.963 kb on + strand, within HP15_309 at 299.972 kb on + strand, within HP15_309 at 299.980 kb on - strand, within HP15_309 at 300.051 kb on + strand, within HP15_309 at 300.059 kb on - strand, within HP15_309 at 300.059 kb on - strand, within HP15_309 at 300.175 kb on + strand, within HP15_309 at 300.231 kb on + strand, within HP15_309 at 300.246 kb on + strand, within HP15_309 at 300.254 kb on - strand, within HP15_309 at 300.304 kb on + strand, within HP15_309 at 300.405 kb on - strand, within HP15_309 at 300.427 kb on - strand, within HP15_309 at 300.566 kb on - strand, within HP15_309 at 300.601 kb on + strand, within HP15_309 at 300.609 kb on - strand, within HP15_309 at 300.672 kb on + strand, within HP15_309 at 300.680 kb on - strand, within HP15_309 at 300.682 kb on + strand, within HP15_309 at 300.682 kb on + strand, within HP15_309 at 300.708 kb on + strand, within HP15_309 at 300.767 kb on - strand, within HP15_309 at 300.863 kb on + strand, within HP15_309 at 300.871 kb on - strand, within HP15_309 at 300.871 kb on - strand, within HP15_309 at 301.036 kb on + strand, within HP15_309 at 301.044 kb on - strand, within HP15_309 at 301.058 kb on + strand, within HP15_309 at 301.122 kb on - strand, within HP15_309 at 301.150 kb on + strand, within HP15_309 at 301.264 kb on - strand, within HP15_309 at 301.439 kb on + strand at 301.486 kb on + strand at 301.501 kb on + strand at 301.566 kb on - strand at 301.618 kb on - strand at 301.698 kb on + strand at 301.816 kb on + strand at 301.857 kb on - strand at 301.874 kb on + strand at 301.877 kb on - strand at 301.882 kb on - strand at 302.003 kb on + strand, within HP15_310 at 302.016 kb on - strand, within HP15_310 at 302.051 kb on - strand, within HP15_310 at 302.053 kb on + strand, within HP15_310 at 302.087 kb on + strand, within HP15_310 at 302.106 kb on - strand, within HP15_310 at 302.134 kb on + strand, within HP15_310 at 302.305 kb on + strand, within HP15_310 at 302.313 kb on - strand, within HP15_310 at 302.313 kb on - strand, within HP15_310 at 302.426 kb on + strand, within HP15_310 at 302.495 kb on + strand, within HP15_310
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 298,571 - -0.0 298,576 - -1.2 298,576 - +0.3 298,677 - HP15_308 0.11 -0.6 298,810 - HP15_308 0.25 +0.2 298,811 - HP15_308 0.25 -0.8 298,870 - HP15_308 0.31 -0.3 298,890 - HP15_308 0.33 -0.2 298,949 + HP15_308 0.39 -0.5 298,957 - HP15_308 0.40 -1.3 299,173 - HP15_308 0.63 -0.7 299,301 - HP15_308 0.76 +1.0 299,401 - HP15_308 0.86 +0.5 299,435 + HP15_308 0.90 +0.5 299,435 + HP15_308 0.90 -0.7 299,506 + +0.2 299,572 + -1.5 299,572 + -0.6 299,572 + -0.3 299,580 - -1.8 299,580 - -1.0 299,644 + -0.4 299,841 + HP15_309 0.14 -1.6 299,914 - HP15_309 0.18 +0.7 299,914 - HP15_309 0.18 -2.6 299,947 + HP15_309 0.20 -0.8 299,963 + HP15_309 0.20 -0.7 299,972 + HP15_309 0.21 -0.4 299,980 - HP15_309 0.21 -0.3 300,051 + HP15_309 0.25 -0.7 300,059 - HP15_309 0.25 +0.4 300,059 - HP15_309 0.25 -1.9 300,175 + HP15_309 0.31 -1.0 300,231 + HP15_309 0.33 -1.7 300,246 + HP15_309 0.34 -1.6 300,254 - HP15_309 0.34 -0.6 300,304 + HP15_309 0.37 -2.0 300,405 - HP15_309 0.42 -2.2 300,427 - HP15_309 0.43 -1.8 300,566 - HP15_309 0.49 -0.9 300,601 + HP15_309 0.51 -0.7 300,609 - HP15_309 0.51 -1.6 300,672 + HP15_309 0.55 -0.7 300,680 - HP15_309 0.55 -0.6 300,682 + HP15_309 0.55 -1.5 300,682 + HP15_309 0.55 -0.9 300,708 + HP15_309 0.56 +1.0 300,767 - HP15_309 0.59 -1.4 300,863 + HP15_309 0.64 -2.3 300,871 - HP15_309 0.64 -1.1 300,871 - HP15_309 0.64 -0.4 301,036 + HP15_309 0.72 -2.0 301,044 - HP15_309 0.72 +1.0 301,058 + HP15_309 0.73 -2.3 301,122 - HP15_309 0.76 +0.1 301,150 + HP15_309 0.78 -1.9 301,264 - HP15_309 0.83 -0.0 301,439 + -3.0 301,486 + -2.2 301,501 + -1.6 301,566 - -1.3 301,618 - +0.1 301,698 + -2.2 301,816 + +0.2 301,857 - -0.1 301,874 + +0.5 301,877 - +0.4 301,882 - +1.2 302,003 + HP15_310 0.17 +0.3 302,016 - HP15_310 0.18 +0.4 302,051 - HP15_310 0.21 -0.3 302,053 + HP15_310 0.21 -0.4 302,087 + HP15_310 0.23 +0.2 302,106 - HP15_310 0.25 +0.4 302,134 + HP15_310 0.27 +0.8 302,305 + HP15_310 0.39 +0.8 302,313 - HP15_310 0.40 -0.8 302,313 - HP15_310 0.40 -0.6 302,426 + HP15_310 0.48 -1.1 302,495 + HP15_310 0.53 -1.6
Or see this region's nucleotide sequence