Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3007 and HP15_3008 overlap by 4 nucleotides HP15_3008 and HP15_3009 overlap by 4 nucleotides HP15_3009 and HP15_3010 are separated by 9 nucleotides HP15_3010 and HP15_3011 overlap by 7 nucleotides
HP15_3007: HP15_3007 - carboxyl-terminal protease family protein, at 3,152,084 to 3,153,490
_3007
HP15_3008: HP15_3008 - secreted protein containing DUF610, YibQ, at 3,153,487 to 3,154,302
_3008
HP15_3009: HP15_3009 - protein containing histidine biosynthesis, HisF domain, at 3,154,299 to 3,155,072
_3009
HP15_3010: HP15_3010 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, at 3,155,082 to 3,155,819
_3010
HP15_3011: HP15_3011 - imidazole glycerol phosphate synthase subunit HisH, at 3,155,813 to 3,156,490
_3011
Position (kb)
3154
3155
3156 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3153.351 kb on - strand at 3153.503 kb on - strand at 3153.505 kb on + strand at 3153.700 kb on - strand, within HP15_3008 at 3153.815 kb on - strand, within HP15_3008 at 3153.832 kb on + strand, within HP15_3008 at 3153.881 kb on - strand, within HP15_3008 at 3153.917 kb on - strand, within HP15_3008 at 3153.960 kb on - strand, within HP15_3008 at 3154.040 kb on + strand, within HP15_3008 at 3154.149 kb on + strand, within HP15_3008 at 3154.215 kb on + strand, within HP15_3008 at 3154.267 kb on - strand at 3154.320 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 3,153,351 - -0.5 3,153,503 - +0.3 3,153,505 + +0.6 3,153,700 - HP15_3008 0.26 -3.3 3,153,815 - HP15_3008 0.40 -0.4 3,153,832 + HP15_3008 0.42 -0.4 3,153,881 - HP15_3008 0.48 -0.2 3,153,917 - HP15_3008 0.53 -0.8 3,153,960 - HP15_3008 0.58 -1.1 3,154,040 + HP15_3008 0.68 -0.4 3,154,149 + HP15_3008 0.81 -0.4 3,154,215 + HP15_3008 0.89 -1.2 3,154,267 - -0.7 3,154,320 - +0.1
Or see this region's nucleotide sequence