Strain Fitness in Marinobacter adhaerens HP15 around HP15_2811

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2810 and HP15_2811 are separated by 225 nucleotidesHP15_2811 and HP15_2812 are separated by 137 nucleotidesHP15_2812 and HP15_2813 are separated by 8 nucleotidesHP15_2813 and HP15_2814 are separated by 80 nucleotidesHP15_2814 and HP15_2815 are separated by 153 nucleotides HP15_2810: HP15_2810 - conserved hypothetical protein, at 2,959,730 to 2,961,037 _2810 HP15_2811: HP15_2811 - MscS mechanosensitive ion channel, at 2,961,263 to 2,962,429 _2811 HP15_2812: HP15_2812 - conserved hypothetical protein, at 2,962,567 to 2,962,752 _2812 HP15_2813: HP15_2813 - conserved hypothetical protein, at 2,962,761 to 2,962,919 _2813 HP15_2814: HP15_2814 - rhodanese domain sulfurtransferase-like protein, at 2,963,000 to 2,963,248 _2814 HP15_2815: HP15_2815 - conserved hypothetical protein, membrane, at 2,963,402 to 2,963,605 _2815 Position (kb) 2961 2962 2963Strain fitness (log2 ratio) -3 -2 -1 0 1at 2960.285 kb on - strand, within HP15_2810at 2960.285 kb on - strand, within HP15_2810at 2960.287 kb on + strand, within HP15_2810at 2960.287 kb on + strand, within HP15_2810at 2960.337 kb on - strand, within HP15_2810at 2960.388 kb on + strand, within HP15_2810at 2960.592 kb on + strand, within HP15_2810at 2960.618 kb on - strand, within HP15_2810at 2960.682 kb on - strand, within HP15_2810at 2960.841 kb on + strand, within HP15_2810at 2960.841 kb on + strand, within HP15_2810at 2960.849 kb on - strand, within HP15_2810at 2960.863 kb on - strand, within HP15_2810at 2960.889 kb on + strand, within HP15_2810at 2960.920 kb on + strandat 2961.163 kb on - strandat 2961.418 kb on + strand, within HP15_2811at 2961.692 kb on - strand, within HP15_2811at 2961.733 kb on - strand, within HP15_2811at 2961.897 kb on - strand, within HP15_2811at 2961.982 kb on + strand, within HP15_2811at 2962.116 kb on + strand, within HP15_2811at 2962.153 kb on + strand, within HP15_2811at 2962.206 kb on - strand, within HP15_2811at 2962.206 kb on - strand, within HP15_2811at 2962.290 kb on + strand, within HP15_2811at 2962.335 kb on + strandat 2962.373 kb on + strandat 2962.405 kb on - strandat 2962.480 kb on + strandat 2962.607 kb on + strand, within HP15_2812at 2962.719 kb on + strand, within HP15_2812at 2962.784 kb on - strand, within HP15_2813at 2962.810 kb on + strand, within HP15_2813at 2962.863 kb on + strand, within HP15_2813at 2962.863 kb on + strand, within HP15_2813at 2962.895 kb on - strand, within HP15_2813at 2962.929 kb on - strandat 2962.968 kb on - strandat 2962.999 kb on + strandat 2963.069 kb on + strand, within HP15_2814at 2963.147 kb on + strand, within HP15_2814at 2963.325 kb on + strandat 2963.401 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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2,960,285 - HP15_2810 0.42 -1.0
2,960,285 - HP15_2810 0.42 +0.2
2,960,287 + HP15_2810 0.43 -0.1
2,960,287 + HP15_2810 0.43 -2.9
2,960,337 - HP15_2810 0.46 -0.1
2,960,388 + HP15_2810 0.50 +0.3
2,960,592 + HP15_2810 0.66 -1.4
2,960,618 - HP15_2810 0.68 +1.0
2,960,682 - HP15_2810 0.73 +0.1
2,960,841 + HP15_2810 0.85 +0.3
2,960,841 + HP15_2810 0.85 -2.7
2,960,849 - HP15_2810 0.86 -1.3
2,960,863 - HP15_2810 0.87 -0.1
2,960,889 + HP15_2810 0.89 +0.1
2,960,920 + -0.5
2,961,163 - -0.2
2,961,418 + HP15_2811 0.13 -1.7
2,961,692 - HP15_2811 0.37 -0.6
2,961,733 - HP15_2811 0.40 -1.3
2,961,897 - HP15_2811 0.54 +0.4
2,961,982 + HP15_2811 0.62 +0.2
2,962,116 + HP15_2811 0.73 -1.9
2,962,153 + HP15_2811 0.76 +0.0
2,962,206 - HP15_2811 0.81 -2.1
2,962,206 - HP15_2811 0.81 -0.1
2,962,290 + HP15_2811 0.88 -1.1
2,962,335 + -0.7
2,962,373 + -0.1
2,962,405 - -1.4
2,962,480 + -1.4
2,962,607 + HP15_2812 0.22 +0.5
2,962,719 + HP15_2812 0.82 +1.3
2,962,784 - HP15_2813 0.14 -0.7
2,962,810 + HP15_2813 0.31 +1.1
2,962,863 + HP15_2813 0.64 +0.6
2,962,863 + HP15_2813 0.64 -0.1
2,962,895 - HP15_2813 0.84 -0.7
2,962,929 - +0.3
2,962,968 - +0.7
2,962,999 + -2.0
2,963,069 + HP15_2814 0.28 +0.1
2,963,147 + HP15_2814 0.59 -1.5
2,963,325 + -1.1
2,963,401 + +0.4

Or see this region's nucleotide sequence