Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2810 and HP15_2811 are separated by 225 nucleotides HP15_2811 and HP15_2812 are separated by 137 nucleotides HP15_2812 and HP15_2813 are separated by 8 nucleotides HP15_2813 and HP15_2814 are separated by 80 nucleotides HP15_2814 and HP15_2815 are separated by 153 nucleotides
HP15_2810: HP15_2810 - conserved hypothetical protein, at 2,959,730 to 2,961,037
_2810
HP15_2811: HP15_2811 - MscS mechanosensitive ion channel, at 2,961,263 to 2,962,429
_2811
HP15_2812: HP15_2812 - conserved hypothetical protein, at 2,962,567 to 2,962,752
_2812
HP15_2813: HP15_2813 - conserved hypothetical protein, at 2,962,761 to 2,962,919
_2813
HP15_2814: HP15_2814 - rhodanese domain sulfurtransferase-like protein, at 2,963,000 to 2,963,248
_2814
HP15_2815: HP15_2815 - conserved hypothetical protein, membrane, at 2,963,402 to 2,963,605
_2815
Position (kb)
2961
2962
2963 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2960.285 kb on - strand, within HP15_2810 at 2960.285 kb on - strand, within HP15_2810 at 2960.287 kb on + strand, within HP15_2810 at 2960.287 kb on + strand, within HP15_2810 at 2960.337 kb on - strand, within HP15_2810 at 2960.388 kb on + strand, within HP15_2810 at 2960.592 kb on + strand, within HP15_2810 at 2960.618 kb on - strand, within HP15_2810 at 2960.682 kb on - strand, within HP15_2810 at 2960.841 kb on + strand, within HP15_2810 at 2960.841 kb on + strand, within HP15_2810 at 2960.849 kb on - strand, within HP15_2810 at 2960.863 kb on - strand, within HP15_2810 at 2960.889 kb on + strand, within HP15_2810 at 2960.920 kb on + strand at 2961.163 kb on - strand at 2961.418 kb on + strand, within HP15_2811 at 2961.692 kb on - strand, within HP15_2811 at 2961.733 kb on - strand, within HP15_2811 at 2961.897 kb on - strand, within HP15_2811 at 2961.982 kb on + strand, within HP15_2811 at 2962.116 kb on + strand, within HP15_2811 at 2962.153 kb on + strand, within HP15_2811 at 2962.206 kb on - strand, within HP15_2811 at 2962.206 kb on - strand, within HP15_2811 at 2962.290 kb on + strand, within HP15_2811 at 2962.335 kb on + strand at 2962.373 kb on + strand at 2962.405 kb on - strand at 2962.480 kb on + strand at 2962.607 kb on + strand, within HP15_2812 at 2962.719 kb on + strand, within HP15_2812 at 2962.784 kb on - strand, within HP15_2813 at 2962.810 kb on + strand, within HP15_2813 at 2962.863 kb on + strand, within HP15_2813 at 2962.863 kb on + strand, within HP15_2813 at 2962.895 kb on - strand, within HP15_2813 at 2962.929 kb on - strand at 2962.968 kb on - strand at 2962.999 kb on + strand at 2963.069 kb on + strand, within HP15_2814 at 2963.147 kb on + strand, within HP15_2814 at 2963.325 kb on + strand at 2963.401 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 2,960,285 - HP15_2810 0.42 -1.0 2,960,285 - HP15_2810 0.42 +0.2 2,960,287 + HP15_2810 0.43 -0.1 2,960,287 + HP15_2810 0.43 -2.9 2,960,337 - HP15_2810 0.46 -0.1 2,960,388 + HP15_2810 0.50 +0.3 2,960,592 + HP15_2810 0.66 -1.4 2,960,618 - HP15_2810 0.68 +1.0 2,960,682 - HP15_2810 0.73 +0.1 2,960,841 + HP15_2810 0.85 +0.3 2,960,841 + HP15_2810 0.85 -2.7 2,960,849 - HP15_2810 0.86 -1.3 2,960,863 - HP15_2810 0.87 -0.1 2,960,889 + HP15_2810 0.89 +0.1 2,960,920 + -0.5 2,961,163 - -0.2 2,961,418 + HP15_2811 0.13 -1.7 2,961,692 - HP15_2811 0.37 -0.6 2,961,733 - HP15_2811 0.40 -1.3 2,961,897 - HP15_2811 0.54 +0.4 2,961,982 + HP15_2811 0.62 +0.2 2,962,116 + HP15_2811 0.73 -1.9 2,962,153 + HP15_2811 0.76 +0.0 2,962,206 - HP15_2811 0.81 -2.1 2,962,206 - HP15_2811 0.81 -0.1 2,962,290 + HP15_2811 0.88 -1.1 2,962,335 + -0.7 2,962,373 + -0.1 2,962,405 - -1.4 2,962,480 + -1.4 2,962,607 + HP15_2812 0.22 +0.5 2,962,719 + HP15_2812 0.82 +1.3 2,962,784 - HP15_2813 0.14 -0.7 2,962,810 + HP15_2813 0.31 +1.1 2,962,863 + HP15_2813 0.64 +0.6 2,962,863 + HP15_2813 0.64 -0.1 2,962,895 - HP15_2813 0.84 -0.7 2,962,929 - +0.3 2,962,968 - +0.7 2,962,999 + -2.0 2,963,069 + HP15_2814 0.28 +0.1 2,963,147 + HP15_2814 0.59 -1.5 2,963,325 + -1.1 2,963,401 + +0.4
Or see this region's nucleotide sequence