Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2177 and HP15_2178 are separated by 17 nucleotides HP15_2178 and HP15_2179 overlap by 8 nucleotides HP15_2179 and HP15_2180 are separated by 190 nucleotides
HP15_2177: HP15_2177 - 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase, at 2,288,841 to 2,289,506
_2177
HP15_2178: HP15_2178 - 6-phosphogluconolactonase, at 2,289,524 to 2,290,237
_2178
HP15_2179: HP15_2179 - glucose-6-phosphate 1-dehydrogenase, at 2,290,230 to 2,291,705
_2179
HP15_2180: HP15_2180 - transcriptional regulator, RpiR family protein, at 2,291,896 to 2,292,789
_2180
Position (kb)
2290
2291
2292 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2289.285 kb on - strand, within HP15_2177 at 2289.444 kb on - strand at 2289.590 kb on + strand at 2289.681 kb on - strand, within HP15_2178 at 2289.686 kb on - strand, within HP15_2178 at 2289.815 kb on - strand, within HP15_2178 at 2289.834 kb on + strand, within HP15_2178 at 2289.842 kb on - strand, within HP15_2178 at 2289.872 kb on - strand, within HP15_2178 at 2289.901 kb on - strand, within HP15_2178 at 2290.024 kb on + strand, within HP15_2178 at 2290.040 kb on + strand, within HP15_2178 at 2290.174 kb on - strand at 2290.407 kb on - strand, within HP15_2179 at 2290.408 kb on + strand at 2290.501 kb on - strand, within HP15_2179 at 2290.519 kb on + strand, within HP15_2179 at 2290.519 kb on + strand, within HP15_2179 at 2290.527 kb on - strand, within HP15_2179 at 2290.611 kb on + strand, within HP15_2179 at 2290.686 kb on + strand, within HP15_2179 at 2290.686 kb on + strand, within HP15_2179 at 2290.694 kb on - strand, within HP15_2179 at 2290.752 kb on - strand, within HP15_2179 at 2290.856 kb on + strand, within HP15_2179 at 2290.864 kb on - strand, within HP15_2179 at 2290.864 kb on - strand, within HP15_2179 at 2291.063 kb on + strand, within HP15_2179 at 2291.156 kb on - strand, within HP15_2179 at 2291.156 kb on - strand, within HP15_2179 at 2291.301 kb on - strand, within HP15_2179 at 2291.405 kb on + strand, within HP15_2179 at 2291.413 kb on - strand, within HP15_2179 at 2291.575 kb on + strand at 2291.667 kb on - strand at 2291.667 kb on - strand at 2292.186 kb on - strand, within HP15_2180 at 2292.261 kb on + strand, within HP15_2180 at 2292.417 kb on + strand, within HP15_2180 at 2292.439 kb on - strand, within HP15_2180 at 2292.540 kb on + strand, within HP15_2180 at 2292.548 kb on - strand, within HP15_2180 at 2292.558 kb on + strand, within HP15_2180 at 2292.691 kb on + strand, within HP15_2180
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 2,289,285 - HP15_2177 0.67 -0.6 2,289,444 - -1.2 2,289,590 + -3.1 2,289,681 - HP15_2178 0.22 -2.5 2,289,686 - HP15_2178 0.23 -2.0 2,289,815 - HP15_2178 0.41 -0.6 2,289,834 + HP15_2178 0.43 -3.8 2,289,842 - HP15_2178 0.45 -2.2 2,289,872 - HP15_2178 0.49 -1.9 2,289,901 - HP15_2178 0.53 -1.3 2,290,024 + HP15_2178 0.70 -1.6 2,290,040 + HP15_2178 0.72 -2.8 2,290,174 - -1.0 2,290,407 - HP15_2179 0.12 +0.3 2,290,408 + -0.0 2,290,501 - HP15_2179 0.18 +1.0 2,290,519 + HP15_2179 0.20 +1.0 2,290,519 + HP15_2179 0.20 +0.8 2,290,527 - HP15_2179 0.20 +0.7 2,290,611 + HP15_2179 0.26 +0.5 2,290,686 + HP15_2179 0.31 +1.0 2,290,686 + HP15_2179 0.31 -0.9 2,290,694 - HP15_2179 0.31 -0.9 2,290,752 - HP15_2179 0.35 -1.8 2,290,856 + HP15_2179 0.42 -0.5 2,290,864 - HP15_2179 0.43 +0.7 2,290,864 - HP15_2179 0.43 +1.1 2,291,063 + HP15_2179 0.56 +2.1 2,291,156 - HP15_2179 0.63 +0.5 2,291,156 - HP15_2179 0.63 +1.8 2,291,301 - HP15_2179 0.73 +1.4 2,291,405 + HP15_2179 0.80 +1.9 2,291,413 - HP15_2179 0.80 +2.2 2,291,575 + +1.1 2,291,667 - +0.0 2,291,667 - -0.1 2,292,186 - HP15_2180 0.32 -0.6 2,292,261 + HP15_2180 0.41 -1.6 2,292,417 + HP15_2180 0.58 -2.4 2,292,439 - HP15_2180 0.61 -2.1 2,292,540 + HP15_2180 0.72 -1.8 2,292,548 - HP15_2180 0.73 -0.4 2,292,558 + HP15_2180 0.74 -0.9 2,292,691 + HP15_2180 0.89 +1.1
Or see this region's nucleotide sequence