Strain Fitness in Marinobacter adhaerens HP15 around HP15_2179

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2177 and HP15_2178 are separated by 17 nucleotidesHP15_2178 and HP15_2179 overlap by 8 nucleotidesHP15_2179 and HP15_2180 are separated by 190 nucleotides HP15_2177: HP15_2177 - 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase, at 2,288,841 to 2,289,506 _2177 HP15_2178: HP15_2178 - 6-phosphogluconolactonase, at 2,289,524 to 2,290,237 _2178 HP15_2179: HP15_2179 - glucose-6-phosphate 1-dehydrogenase, at 2,290,230 to 2,291,705 _2179 HP15_2180: HP15_2180 - transcriptional regulator, RpiR family protein, at 2,291,896 to 2,292,789 _2180 Position (kb) 2290 2291 2292Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2289.285 kb on - strand, within HP15_2177at 2289.444 kb on - strandat 2289.590 kb on + strandat 2289.681 kb on - strand, within HP15_2178at 2289.686 kb on - strand, within HP15_2178at 2289.815 kb on - strand, within HP15_2178at 2289.834 kb on + strand, within HP15_2178at 2289.842 kb on - strand, within HP15_2178at 2289.872 kb on - strand, within HP15_2178at 2289.901 kb on - strand, within HP15_2178at 2290.024 kb on + strand, within HP15_2178at 2290.040 kb on + strand, within HP15_2178at 2290.174 kb on - strandat 2290.407 kb on - strand, within HP15_2179at 2290.408 kb on + strandat 2290.501 kb on - strand, within HP15_2179at 2290.519 kb on + strand, within HP15_2179at 2290.519 kb on + strand, within HP15_2179at 2290.527 kb on - strand, within HP15_2179at 2290.611 kb on + strand, within HP15_2179at 2290.686 kb on + strand, within HP15_2179at 2290.686 kb on + strand, within HP15_2179at 2290.694 kb on - strand, within HP15_2179at 2290.752 kb on - strand, within HP15_2179at 2290.856 kb on + strand, within HP15_2179at 2290.864 kb on - strand, within HP15_2179at 2290.864 kb on - strand, within HP15_2179at 2291.063 kb on + strand, within HP15_2179at 2291.156 kb on - strand, within HP15_2179at 2291.156 kb on - strand, within HP15_2179at 2291.301 kb on - strand, within HP15_2179at 2291.405 kb on + strand, within HP15_2179at 2291.413 kb on - strand, within HP15_2179at 2291.575 kb on + strandat 2291.667 kb on - strandat 2291.667 kb on - strandat 2292.186 kb on - strand, within HP15_2180at 2292.261 kb on + strand, within HP15_2180at 2292.417 kb on + strand, within HP15_2180at 2292.439 kb on - strand, within HP15_2180at 2292.540 kb on + strand, within HP15_2180at 2292.548 kb on - strand, within HP15_2180at 2292.558 kb on + strand, within HP15_2180at 2292.691 kb on + strand, within HP15_2180

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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2,289,285 - HP15_2177 0.67 -0.6
2,289,444 - -1.2
2,289,590 + -3.1
2,289,681 - HP15_2178 0.22 -2.5
2,289,686 - HP15_2178 0.23 -2.0
2,289,815 - HP15_2178 0.41 -0.6
2,289,834 + HP15_2178 0.43 -3.8
2,289,842 - HP15_2178 0.45 -2.2
2,289,872 - HP15_2178 0.49 -1.9
2,289,901 - HP15_2178 0.53 -1.3
2,290,024 + HP15_2178 0.70 -1.6
2,290,040 + HP15_2178 0.72 -2.8
2,290,174 - -1.0
2,290,407 - HP15_2179 0.12 +0.3
2,290,408 + -0.0
2,290,501 - HP15_2179 0.18 +1.0
2,290,519 + HP15_2179 0.20 +1.0
2,290,519 + HP15_2179 0.20 +0.8
2,290,527 - HP15_2179 0.20 +0.7
2,290,611 + HP15_2179 0.26 +0.5
2,290,686 + HP15_2179 0.31 +1.0
2,290,686 + HP15_2179 0.31 -0.9
2,290,694 - HP15_2179 0.31 -0.9
2,290,752 - HP15_2179 0.35 -1.8
2,290,856 + HP15_2179 0.42 -0.5
2,290,864 - HP15_2179 0.43 +0.7
2,290,864 - HP15_2179 0.43 +1.1
2,291,063 + HP15_2179 0.56 +2.1
2,291,156 - HP15_2179 0.63 +0.5
2,291,156 - HP15_2179 0.63 +1.8
2,291,301 - HP15_2179 0.73 +1.4
2,291,405 + HP15_2179 0.80 +1.9
2,291,413 - HP15_2179 0.80 +2.2
2,291,575 + +1.1
2,291,667 - +0.0
2,291,667 - -0.1
2,292,186 - HP15_2180 0.32 -0.6
2,292,261 + HP15_2180 0.41 -1.6
2,292,417 + HP15_2180 0.58 -2.4
2,292,439 - HP15_2180 0.61 -2.1
2,292,540 + HP15_2180 0.72 -1.8
2,292,548 - HP15_2180 0.73 -0.4
2,292,558 + HP15_2180 0.74 -0.9
2,292,691 + HP15_2180 0.89 +1.1

Or see this region's nucleotide sequence