Strain Fitness in Marinobacter adhaerens HP15 around HP15_2150

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2149 and HP15_2150 are separated by 31 nucleotidesHP15_2150 and HP15_2151 are separated by 12 nucleotides HP15_2149: HP15_2149 - conserved hypothetical protein, at 2,251,678 to 2,252,688 _2149 HP15_2150: HP15_2150 - ATPase, at 2,252,720 to 2,255,185 _2150 HP15_2151: HP15_2151 - conserved hypothetical protein, at 2,255,198 to 2,256,757 _2151 Position (kb) 2252 2253 2254 2255 2256Strain fitness (log2 ratio) -2 -1 0 1at 2251.957 kb on - strand, within HP15_2149at 2252.031 kb on + strand, within HP15_2149at 2252.174 kb on + strand, within HP15_2149at 2252.232 kb on - strand, within HP15_2149at 2252.276 kb on + strand, within HP15_2149at 2252.372 kb on + strand, within HP15_2149at 2252.380 kb on - strand, within HP15_2149at 2252.382 kb on + strand, within HP15_2149at 2252.382 kb on + strand, within HP15_2149at 2252.390 kb on - strand, within HP15_2149at 2252.469 kb on - strand, within HP15_2149at 2252.665 kb on + strandat 2252.670 kb on + strandat 2252.673 kb on + strandat 2252.673 kb on - strandat 2252.753 kb on + strandat 2252.761 kb on - strandat 2252.829 kb on + strandat 2253.041 kb on - strand, within HP15_2150at 2253.041 kb on - strand, within HP15_2150at 2253.057 kb on - strand, within HP15_2150at 2253.057 kb on - strand, within HP15_2150at 2253.135 kb on + strand, within HP15_2150at 2253.143 kb on - strand, within HP15_2150at 2253.195 kb on - strand, within HP15_2150at 2253.259 kb on + strand, within HP15_2150at 2253.267 kb on - strand, within HP15_2150at 2253.267 kb on - strand, within HP15_2150at 2253.303 kb on - strand, within HP15_2150at 2253.390 kb on - strand, within HP15_2150at 2253.397 kb on - strand, within HP15_2150at 2253.419 kb on + strand, within HP15_2150at 2253.502 kb on - strand, within HP15_2150at 2253.626 kb on + strand, within HP15_2150at 2253.660 kb on + strand, within HP15_2150at 2253.678 kb on + strand, within HP15_2150at 2253.716 kb on - strand, within HP15_2150at 2253.769 kb on - strand, within HP15_2150at 2253.769 kb on - strand, within HP15_2150at 2253.798 kb on - strand, within HP15_2150at 2253.852 kb on + strand, within HP15_2150at 2253.874 kb on - strand, within HP15_2150at 2253.944 kb on + strand, within HP15_2150at 2254.037 kb on - strand, within HP15_2150at 2254.061 kb on + strand, within HP15_2150at 2254.148 kb on - strand, within HP15_2150at 2254.156 kb on + strand, within HP15_2150at 2254.158 kb on - strand, within HP15_2150at 2254.238 kb on - strand, within HP15_2150at 2254.251 kb on + strand, within HP15_2150at 2254.259 kb on - strand, within HP15_2150at 2254.276 kb on + strand, within HP15_2150at 2254.288 kb on + strand, within HP15_2150at 2254.392 kb on + strand, within HP15_2150at 2254.392 kb on + strand, within HP15_2150at 2254.404 kb on + strand, within HP15_2150at 2254.480 kb on - strand, within HP15_2150at 2254.485 kb on - strand, within HP15_2150at 2254.507 kb on - strand, within HP15_2150at 2254.515 kb on + strand, within HP15_2150at 2254.515 kb on + strand, within HP15_2150at 2254.538 kb on + strand, within HP15_2150at 2254.538 kb on + strand, within HP15_2150at 2254.576 kb on - strand, within HP15_2150at 2254.671 kb on - strand, within HP15_2150at 2254.826 kb on - strand, within HP15_2150at 2254.831 kb on - strand, within HP15_2150at 2254.840 kb on - strand, within HP15_2150at 2254.862 kb on - strand, within HP15_2150at 2254.862 kb on - strand, within HP15_2150at 2254.867 kb on - strand, within HP15_2150at 2254.867 kb on - strand, within HP15_2150at 2255.103 kb on + strandat 2255.104 kb on + strandat 2255.112 kb on - strandat 2255.175 kb on + strandat 2255.324 kb on + strandat 2255.359 kb on + strand, within HP15_2151at 2255.367 kb on - strand, within HP15_2151at 2255.383 kb on + strand, within HP15_2151at 2255.388 kb on - strand, within HP15_2151at 2255.426 kb on + strand, within HP15_2151at 2255.434 kb on - strand, within HP15_2151at 2255.465 kb on - strand, within HP15_2151at 2255.596 kb on + strand, within HP15_2151at 2255.804 kb on - strand, within HP15_2151at 2255.859 kb on + strand, within HP15_2151at 2255.978 kb on - strand, within HP15_2151at 2256.007 kb on + strand, within HP15_2151

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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2,251,957 - HP15_2149 0.28 +0.2
2,252,031 + HP15_2149 0.35 +0.0
2,252,174 + HP15_2149 0.49 +0.8
2,252,232 - HP15_2149 0.55 -2.0
2,252,276 + HP15_2149 0.59 +0.2
2,252,372 + HP15_2149 0.69 -1.0
2,252,380 - HP15_2149 0.69 +0.4
2,252,382 + HP15_2149 0.70 +0.4
2,252,382 + HP15_2149 0.70 -0.4
2,252,390 - HP15_2149 0.70 +0.7
2,252,469 - HP15_2149 0.78 -1.4
2,252,665 + -0.4
2,252,670 + +0.7
2,252,673 + +1.0
2,252,673 - -0.6
2,252,753 + +0.7
2,252,761 - +0.3
2,252,829 + +0.3
2,253,041 - HP15_2150 0.13 +0.2
2,253,041 - HP15_2150 0.13 +0.2
2,253,057 - HP15_2150 0.14 -0.8
2,253,057 - HP15_2150 0.14 +0.7
2,253,135 + HP15_2150 0.17 -0.9
2,253,143 - HP15_2150 0.17 +0.7
2,253,195 - HP15_2150 0.19 +0.6
2,253,259 + HP15_2150 0.22 -0.6
2,253,267 - HP15_2150 0.22 +1.2
2,253,267 - HP15_2150 0.22 -2.0
2,253,303 - HP15_2150 0.24 +0.9
2,253,390 - HP15_2150 0.27 +0.4
2,253,397 - HP15_2150 0.27 -1.5
2,253,419 + HP15_2150 0.28 +0.5
2,253,502 - HP15_2150 0.32 +0.6
2,253,626 + HP15_2150 0.37 +0.9
2,253,660 + HP15_2150 0.38 -0.3
2,253,678 + HP15_2150 0.39 +0.3
2,253,716 - HP15_2150 0.40 +1.5
2,253,769 - HP15_2150 0.43 +0.4
2,253,769 - HP15_2150 0.43 -0.0
2,253,798 - HP15_2150 0.44 +0.6
2,253,852 + HP15_2150 0.46 -0.5
2,253,874 - HP15_2150 0.47 -1.3
2,253,944 + HP15_2150 0.50 +0.5
2,254,037 - HP15_2150 0.53 +0.2
2,254,061 + HP15_2150 0.54 +0.2
2,254,148 - HP15_2150 0.58 +0.4
2,254,156 + HP15_2150 0.58 -1.1
2,254,158 - HP15_2150 0.58 -0.4
2,254,238 - HP15_2150 0.62 +0.6
2,254,251 + HP15_2150 0.62 -0.5
2,254,259 - HP15_2150 0.62 -1.2
2,254,276 + HP15_2150 0.63 +1.7
2,254,288 + HP15_2150 0.64 -0.3
2,254,392 + HP15_2150 0.68 +0.4
2,254,392 + HP15_2150 0.68 +1.6
2,254,404 + HP15_2150 0.68 +1.1
2,254,480 - HP15_2150 0.71 -1.4
2,254,485 - HP15_2150 0.72 +1.1
2,254,507 - HP15_2150 0.72 +0.1
2,254,515 + HP15_2150 0.73 -2.5
2,254,515 + HP15_2150 0.73 +0.7
2,254,538 + HP15_2150 0.74 -2.5
2,254,538 + HP15_2150 0.74 -1.1
2,254,576 - HP15_2150 0.75 +1.2
2,254,671 - HP15_2150 0.79 +1.2
2,254,826 - HP15_2150 0.85 -1.9
2,254,831 - HP15_2150 0.86 +0.1
2,254,840 - HP15_2150 0.86 +0.4
2,254,862 - HP15_2150 0.87 +0.2
2,254,862 - HP15_2150 0.87 -0.2
2,254,867 - HP15_2150 0.87 +0.1
2,254,867 - HP15_2150 0.87 -0.5
2,255,103 + -0.3
2,255,104 + -0.5
2,255,112 - -0.8
2,255,175 + +0.2
2,255,324 + -1.7
2,255,359 + HP15_2151 0.10 +0.4
2,255,367 - HP15_2151 0.11 -1.5
2,255,383 + HP15_2151 0.12 +0.6
2,255,388 - HP15_2151 0.12 +0.7
2,255,426 + HP15_2151 0.15 -1.5
2,255,434 - HP15_2151 0.15 +0.1
2,255,465 - HP15_2151 0.17 +0.6
2,255,596 + HP15_2151 0.26 +1.1
2,255,804 - HP15_2151 0.39 +0.4
2,255,859 + HP15_2151 0.42 -0.0
2,255,978 - HP15_2151 0.50 +0.4
2,256,007 + HP15_2151 0.52 +0.3

Or see this region's nucleotide sequence