Strain Fitness in Marinobacter adhaerens HP15 around HP15_1901

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1899 and HP15_1900 are separated by 11 nucleotidesHP15_1900 and HP15_1901 are separated by 32 nucleotidesHP15_1901 and HP15_1902 are separated by 57 nucleotidesHP15_1902 and HP15_1903 are separated by 56 nucleotides HP15_1899: HP15_1899 - UDP-Glucose 4-empimerase, at 2,008,918 to 2,009,943 _1899 HP15_1900: HP15_1900 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 2,009,955 to 2,010,479 _1900 HP15_1901: HP15_1901 - SAF domain protein, at 2,010,512 to 2,011,798 _1901 HP15_1902: HP15_1902 - glucose-1-phosphate cytidylyltransferase, at 2,011,856 to 2,012,608 _1902 HP15_1903: HP15_1903 - N-acetylglucosaminyl phosphatidylinositol deacetylase, at 2,012,665 to 2,013,273 _1903 Position (kb) 2010 2011 2012Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2009.604 kb on - strand, within HP15_1899at 2009.692 kb on + strand, within HP15_1899at 2009.722 kb on - strand, within HP15_1899at 2009.722 kb on - strand, within HP15_1899at 2009.722 kb on - strand, within HP15_1899at 2009.783 kb on + strand, within HP15_1899at 2009.801 kb on + strand, within HP15_1899at 2009.801 kb on - strand, within HP15_1899at 2009.801 kb on - strand, within HP15_1899at 2009.819 kb on - strand, within HP15_1899at 2010.302 kb on - strand, within HP15_1900at 2010.395 kb on - strand, within HP15_1900at 2010.548 kb on + strandat 2010.601 kb on + strandat 2010.616 kb on + strandat 2010.624 kb on - strandat 2010.668 kb on - strand, within HP15_1901at 2010.701 kb on + strand, within HP15_1901at 2010.757 kb on + strand, within HP15_1901at 2010.907 kb on - strand, within HP15_1901at 2011.047 kb on - strand, within HP15_1901at 2011.063 kb on + strand, within HP15_1901at 2011.209 kb on + strand, within HP15_1901at 2011.211 kb on - strand, within HP15_1901at 2011.234 kb on + strand, within HP15_1901at 2011.451 kb on - strand, within HP15_1901at 2011.509 kb on + strand, within HP15_1901at 2011.590 kb on + strand, within HP15_1901at 2011.670 kb on + strandat 2011.762 kb on + strandat 2011.812 kb on + strandat 2012.002 kb on - strand, within HP15_1902at 2012.164 kb on - strand, within HP15_1902at 2012.340 kb on - strand, within HP15_1902at 2012.357 kb on - strand, within HP15_1902at 2012.360 kb on - strand, within HP15_1902at 2012.444 kb on + strand, within HP15_1902at 2012.555 kb on - strandat 2012.614 kb on + strandat 2012.614 kb on + strandat 2012.622 kb on - strandat 2012.638 kb on + strandat 2012.653 kb on - strandat 2012.702 kb on + strandat 2012.736 kb on - strand, within HP15_1903at 2012.738 kb on + strand, within HP15_1903at 2012.751 kb on - strand, within HP15_1903at 2012.753 kb on + strand, within HP15_1903

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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2,009,604 - HP15_1899 0.67 -0.7
2,009,692 + HP15_1899 0.75 +1.4
2,009,722 - HP15_1899 0.78 +0.3
2,009,722 - HP15_1899 0.78 -0.2
2,009,722 - HP15_1899 0.78 +0.0
2,009,783 + HP15_1899 0.84 +0.0
2,009,801 + HP15_1899 0.86 +0.1
2,009,801 - HP15_1899 0.86 +0.3
2,009,801 - HP15_1899 0.86 -0.3
2,009,819 - HP15_1899 0.88 -3.7
2,010,302 - HP15_1900 0.66 -0.7
2,010,395 - HP15_1900 0.84 -1.2
2,010,548 + +1.1
2,010,601 + +1.8
2,010,616 + +0.2
2,010,624 - +0.7
2,010,668 - HP15_1901 0.12 -0.9
2,010,701 + HP15_1901 0.15 -1.1
2,010,757 + HP15_1901 0.19 +0.4
2,010,907 - HP15_1901 0.31 -1.5
2,011,047 - HP15_1901 0.42 -0.7
2,011,063 + HP15_1901 0.43 -1.6
2,011,209 + HP15_1901 0.54 +0.3
2,011,211 - HP15_1901 0.54 +0.4
2,011,234 + HP15_1901 0.56 -0.2
2,011,451 - HP15_1901 0.73 +0.4
2,011,509 + HP15_1901 0.77 -0.8
2,011,590 + HP15_1901 0.84 -1.5
2,011,670 + -0.4
2,011,762 + -0.4
2,011,812 + +0.1
2,012,002 - HP15_1902 0.19 +1.4
2,012,164 - HP15_1902 0.41 +0.3
2,012,340 - HP15_1902 0.64 +0.7
2,012,357 - HP15_1902 0.67 +0.2
2,012,360 - HP15_1902 0.67 -1.0
2,012,444 + HP15_1902 0.78 +0.1
2,012,555 - -0.1
2,012,614 + -1.7
2,012,614 + +0.4
2,012,622 - -0.2
2,012,638 + +0.2
2,012,653 - +0.7
2,012,702 + +0.5
2,012,736 - HP15_1903 0.12 +0.9
2,012,738 + HP15_1903 0.12 -0.3
2,012,751 - HP15_1903 0.14 +1.0
2,012,753 + HP15_1903 0.14 -1.0

Or see this region's nucleotide sequence