Strain Fitness in Marinobacter adhaerens HP15 around HP15_1862

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1860 and HP15_1861 are separated by 143 nucleotidesHP15_1861 and HP15_1862 are separated by 12 nucleotidesHP15_1862 and HP15_1863 are separated by 150 nucleotides HP15_1860: HP15_1860 - VacJ family lipoprotein, at 1,963,370 to 1,964,161 _1860 HP15_1861: HP15_1861 - thioesterase superfamily protein, at 1,964,305 to 1,964,655 _1861 HP15_1862: HP15_1862 - 3-oxoacyl-(acyl carrier protein) synthase III, at 1,964,668 to 1,965,789 _1862 HP15_1863: HP15_1863 - RNA helicase, ATP-dependent DEAH box, HrpA type, at 1,965,940 to 1,969,875 _1863 Position (kb) 1964 1965 1966Strain fitness (log2 ratio) -3 -2 -1 0 1at 1963.749 kb on - strand, within HP15_1860at 1963.777 kb on + strand, within HP15_1860at 1963.777 kb on + strand, within HP15_1860at 1963.784 kb on + strand, within HP15_1860at 1963.867 kb on + strand, within HP15_1860at 1964.035 kb on - strand, within HP15_1860at 1964.249 kb on + strandat 1964.274 kb on + strandat 1964.284 kb on - strandat 1964.343 kb on - strand, within HP15_1861at 1964.381 kb on + strand, within HP15_1861at 1964.425 kb on + strand, within HP15_1861at 1964.503 kb on + strand, within HP15_1861at 1964.808 kb on + strand, within HP15_1862at 1964.855 kb on + strand, within HP15_1862at 1964.856 kb on - strand, within HP15_1862at 1964.882 kb on - strand, within HP15_1862at 1965.128 kb on + strand, within HP15_1862at 1965.311 kb on - strand, within HP15_1862at 1965.311 kb on - strand, within HP15_1862at 1965.416 kb on - strand, within HP15_1862at 1965.506 kb on + strand, within HP15_1862at 1965.683 kb on + strandat 1965.691 kb on - strandat 1965.701 kb on - strandat 1965.713 kb on + strandat 1965.762 kb on - strandat 1965.808 kb on - strandat 1966.079 kb on - strandat 1966.079 kb on - strandat 1966.128 kb on + strandat 1966.136 kb on - strandat 1966.136 kb on - strandat 1966.208 kb on - strandat 1966.367 kb on + strand, within HP15_1863at 1966.388 kb on + strand, within HP15_1863at 1966.438 kb on + strand, within HP15_1863at 1966.454 kb on - strand, within HP15_1863at 1966.568 kb on - strand, within HP15_1863at 1966.673 kb on - strand, within HP15_1863

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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1,963,749 - HP15_1860 0.48 -0.9
1,963,777 + HP15_1860 0.51 -1.2
1,963,777 + HP15_1860 0.51 -0.6
1,963,784 + HP15_1860 0.52 -1.2
1,963,867 + HP15_1860 0.63 -0.7
1,964,035 - HP15_1860 0.84 -0.7
1,964,249 + -1.3
1,964,274 + -1.3
1,964,284 - -2.0
1,964,343 - HP15_1861 0.11 +0.3
1,964,381 + HP15_1861 0.22 -1.6
1,964,425 + HP15_1861 0.34 -1.8
1,964,503 + HP15_1861 0.56 -2.5
1,964,808 + HP15_1862 0.12 +1.0
1,964,855 + HP15_1862 0.17 -0.3
1,964,856 - HP15_1862 0.17 +0.4
1,964,882 - HP15_1862 0.19 +0.5
1,965,128 + HP15_1862 0.41 +0.9
1,965,311 - HP15_1862 0.57 -1.5
1,965,311 - HP15_1862 0.57 +0.4
1,965,416 - HP15_1862 0.67 -2.8
1,965,506 + HP15_1862 0.75 -0.8
1,965,683 + -0.6
1,965,691 - -0.5
1,965,701 - +0.3
1,965,713 + +0.0
1,965,762 - +0.2
1,965,808 - -0.6
1,966,079 - -2.0
1,966,079 - -0.1
1,966,128 + +0.1
1,966,136 - -0.1
1,966,136 - -1.4
1,966,208 - +0.8
1,966,367 + HP15_1863 0.11 +0.0
1,966,388 + HP15_1863 0.11 -0.0
1,966,438 + HP15_1863 0.13 +0.2
1,966,454 - HP15_1863 0.13 -0.6
1,966,568 - HP15_1863 0.16 -0.7
1,966,673 - HP15_1863 0.19 -0.3

Or see this region's nucleotide sequence