Strain Fitness in Marinobacter adhaerens HP15 around HP15_1690

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1689 and HP15_1690 are separated by 27 nucleotidesHP15_1690 and HP15_1691 are separated by 255 nucleotides HP15_1689: HP15_1689 - sensory box/GGDEF family protein, at 1,774,923 to 1,776,980 _1689 HP15_1690: HP15_1690 - glutathione-regulated potassium-efflux system protein KefC, at 1,777,008 to 1,778,888 _1690 HP15_1691: HP15_1691 - ATPase AAA-2 domain protein, at 1,779,144 to 1,781,882 _1691 Position (kb) 1777 1778 1779Strain fitness (log2 ratio) -3 -2 -1 0 1at 1776.022 kb on - strand, within HP15_1689at 1776.047 kb on - strand, within HP15_1689at 1776.101 kb on + strand, within HP15_1689at 1776.120 kb on + strand, within HP15_1689at 1776.130 kb on + strand, within HP15_1689at 1776.130 kb on + strand, within HP15_1689at 1776.219 kb on - strand, within HP15_1689at 1776.226 kb on + strand, within HP15_1689at 1776.228 kb on + strand, within HP15_1689at 1776.474 kb on + strand, within HP15_1689at 1776.518 kb on - strand, within HP15_1689at 1776.528 kb on + strand, within HP15_1689at 1776.700 kb on + strand, within HP15_1689at 1776.850 kb on + strandat 1776.850 kb on + strandat 1776.850 kb on + strandat 1776.858 kb on - strandat 1776.860 kb on + strandat 1776.975 kb on - strandat 1777.086 kb on - strandat 1777.162 kb on + strandat 1777.206 kb on + strand, within HP15_1690at 1777.215 kb on + strand, within HP15_1690at 1777.336 kb on - strand, within HP15_1690at 1777.359 kb on + strand, within HP15_1690at 1777.364 kb on + strand, within HP15_1690at 1777.557 kb on + strand, within HP15_1690at 1777.701 kb on + strand, within HP15_1690at 1777.806 kb on + strand, within HP15_1690at 1777.806 kb on + strand, within HP15_1690at 1777.806 kb on + strand, within HP15_1690at 1777.814 kb on - strand, within HP15_1690at 1777.814 kb on - strand, within HP15_1690at 1777.814 kb on - strand, within HP15_1690at 1777.814 kb on - strand, within HP15_1690at 1777.824 kb on - strand, within HP15_1690at 1777.849 kb on + strand, within HP15_1690at 1778.109 kb on + strand, within HP15_1690at 1778.112 kb on - strand, within HP15_1690at 1778.249 kb on + strand, within HP15_1690at 1778.330 kb on + strand, within HP15_1690at 1778.467 kb on + strand, within HP15_1690at 1778.537 kb on - strand, within HP15_1690at 1778.542 kb on - strand, within HP15_1690at 1778.614 kb on - strand, within HP15_1690at 1778.636 kb on + strand, within HP15_1690at 1778.737 kb on - strandat 1778.798 kb on + strandat 1778.870 kb on + strandat 1778.931 kb on + strandat 1779.118 kb on - strandat 1779.247 kb on + strandat 1779.292 kb on + strandat 1779.292 kb on + strandat 1779.332 kb on - strandat 1779.332 kb on - strandat 1779.572 kb on + strand, within HP15_1691at 1779.671 kb on + strand, within HP15_1691at 1779.689 kb on + strand, within HP15_1691at 1779.689 kb on + strand, within HP15_1691at 1779.697 kb on - strand, within HP15_1691at 1779.843 kb on - strand, within HP15_1691at 1779.852 kb on + strand, within HP15_1691at 1779.855 kb on - strand, within HP15_1691

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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1,776,022 - HP15_1689 0.53 -1.1
1,776,047 - HP15_1689 0.55 -1.0
1,776,101 + HP15_1689 0.57 -1.9
1,776,120 + HP15_1689 0.58 -1.2
1,776,130 + HP15_1689 0.59 -0.2
1,776,130 + HP15_1689 0.59 -0.7
1,776,219 - HP15_1689 0.63 +0.1
1,776,226 + HP15_1689 0.63 -1.4
1,776,228 + HP15_1689 0.63 -0.4
1,776,474 + HP15_1689 0.75 -0.1
1,776,518 - HP15_1689 0.78 -2.1
1,776,528 + HP15_1689 0.78 +0.1
1,776,700 + HP15_1689 0.86 +0.3
1,776,850 + -0.1
1,776,850 + -0.2
1,776,850 + -0.0
1,776,858 - -0.4
1,776,860 + -0.7
1,776,975 - -0.9
1,777,086 - +1.0
1,777,162 + -0.3
1,777,206 + HP15_1690 0.11 -1.9
1,777,215 + HP15_1690 0.11 -1.2
1,777,336 - HP15_1690 0.17 +1.0
1,777,359 + HP15_1690 0.19 +0.0
1,777,364 + HP15_1690 0.19 -0.2
1,777,557 + HP15_1690 0.29 -0.8
1,777,701 + HP15_1690 0.37 +0.9
1,777,806 + HP15_1690 0.42 -0.0
1,777,806 + HP15_1690 0.42 -1.7
1,777,806 + HP15_1690 0.42 -1.3
1,777,814 - HP15_1690 0.43 +0.4
1,777,814 - HP15_1690 0.43 -1.4
1,777,814 - HP15_1690 0.43 -2.0
1,777,814 - HP15_1690 0.43 -1.3
1,777,824 - HP15_1690 0.43 -1.3
1,777,849 + HP15_1690 0.45 -0.1
1,778,109 + HP15_1690 0.59 +0.6
1,778,112 - HP15_1690 0.59 -1.0
1,778,249 + HP15_1690 0.66 -0.3
1,778,330 + HP15_1690 0.70 +0.3
1,778,467 + HP15_1690 0.78 -0.7
1,778,537 - HP15_1690 0.81 +0.5
1,778,542 - HP15_1690 0.82 +0.8
1,778,614 - HP15_1690 0.85 -1.0
1,778,636 + HP15_1690 0.87 -0.5
1,778,737 - -0.4
1,778,798 + -2.7
1,778,870 + -0.1
1,778,931 + -0.3
1,779,118 - -0.1
1,779,247 + +0.8
1,779,292 + -2.9
1,779,292 + +0.2
1,779,332 - -1.3
1,779,332 - +0.0
1,779,572 + HP15_1691 0.16 +0.4
1,779,671 + HP15_1691 0.19 +0.3
1,779,689 + HP15_1691 0.20 -1.3
1,779,689 + HP15_1691 0.20 +0.2
1,779,697 - HP15_1691 0.20 +0.0
1,779,843 - HP15_1691 0.26 +1.0
1,779,852 + HP15_1691 0.26 +0.2
1,779,855 - HP15_1691 0.26 +0.5

Or see this region's nucleotide sequence