Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1689 and HP15_1690 are separated by 27 nucleotides HP15_1690 and HP15_1691 are separated by 255 nucleotides
HP15_1689: HP15_1689 - sensory box/GGDEF family protein, at 1,774,923 to 1,776,980
_1689
HP15_1690: HP15_1690 - glutathione-regulated potassium-efflux system protein KefC, at 1,777,008 to 1,778,888
_1690
HP15_1691: HP15_1691 - ATPase AAA-2 domain protein, at 1,779,144 to 1,781,882
_1691
Position (kb)
1777
1778
1779 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1776.022 kb on - strand, within HP15_1689 at 1776.047 kb on - strand, within HP15_1689 at 1776.101 kb on + strand, within HP15_1689 at 1776.120 kb on + strand, within HP15_1689 at 1776.130 kb on + strand, within HP15_1689 at 1776.130 kb on + strand, within HP15_1689 at 1776.219 kb on - strand, within HP15_1689 at 1776.226 kb on + strand, within HP15_1689 at 1776.228 kb on + strand, within HP15_1689 at 1776.474 kb on + strand, within HP15_1689 at 1776.518 kb on - strand, within HP15_1689 at 1776.528 kb on + strand, within HP15_1689 at 1776.700 kb on + strand, within HP15_1689 at 1776.850 kb on + strand at 1776.850 kb on + strand at 1776.850 kb on + strand at 1776.858 kb on - strand at 1776.860 kb on + strand at 1776.975 kb on - strand at 1777.086 kb on - strand at 1777.162 kb on + strand at 1777.206 kb on + strand, within HP15_1690 at 1777.215 kb on + strand, within HP15_1690 at 1777.336 kb on - strand, within HP15_1690 at 1777.359 kb on + strand, within HP15_1690 at 1777.364 kb on + strand, within HP15_1690 at 1777.557 kb on + strand, within HP15_1690 at 1777.701 kb on + strand, within HP15_1690 at 1777.806 kb on + strand, within HP15_1690 at 1777.806 kb on + strand, within HP15_1690 at 1777.806 kb on + strand, within HP15_1690 at 1777.814 kb on - strand, within HP15_1690 at 1777.814 kb on - strand, within HP15_1690 at 1777.814 kb on - strand, within HP15_1690 at 1777.814 kb on - strand, within HP15_1690 at 1777.824 kb on - strand, within HP15_1690 at 1777.849 kb on + strand, within HP15_1690 at 1778.109 kb on + strand, within HP15_1690 at 1778.112 kb on - strand, within HP15_1690 at 1778.249 kb on + strand, within HP15_1690 at 1778.330 kb on + strand, within HP15_1690 at 1778.467 kb on + strand, within HP15_1690 at 1778.537 kb on - strand, within HP15_1690 at 1778.542 kb on - strand, within HP15_1690 at 1778.614 kb on - strand, within HP15_1690 at 1778.636 kb on + strand, within HP15_1690 at 1778.737 kb on - strand at 1778.798 kb on + strand at 1778.870 kb on + strand at 1778.931 kb on + strand at 1779.118 kb on - strand at 1779.247 kb on + strand at 1779.292 kb on + strand at 1779.292 kb on + strand at 1779.332 kb on - strand at 1779.332 kb on - strand at 1779.572 kb on + strand, within HP15_1691 at 1779.671 kb on + strand, within HP15_1691 at 1779.689 kb on + strand, within HP15_1691 at 1779.689 kb on + strand, within HP15_1691 at 1779.697 kb on - strand, within HP15_1691 at 1779.843 kb on - strand, within HP15_1691 at 1779.852 kb on + strand, within HP15_1691 at 1779.855 kb on - strand, within HP15_1691
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 1,776,022 - HP15_1689 0.53 -1.1 1,776,047 - HP15_1689 0.55 -1.0 1,776,101 + HP15_1689 0.57 -1.9 1,776,120 + HP15_1689 0.58 -1.2 1,776,130 + HP15_1689 0.59 -0.2 1,776,130 + HP15_1689 0.59 -0.7 1,776,219 - HP15_1689 0.63 +0.1 1,776,226 + HP15_1689 0.63 -1.4 1,776,228 + HP15_1689 0.63 -0.4 1,776,474 + HP15_1689 0.75 -0.1 1,776,518 - HP15_1689 0.78 -2.1 1,776,528 + HP15_1689 0.78 +0.1 1,776,700 + HP15_1689 0.86 +0.3 1,776,850 + -0.1 1,776,850 + -0.2 1,776,850 + -0.0 1,776,858 - -0.4 1,776,860 + -0.7 1,776,975 - -0.9 1,777,086 - +1.0 1,777,162 + -0.3 1,777,206 + HP15_1690 0.11 -1.9 1,777,215 + HP15_1690 0.11 -1.2 1,777,336 - HP15_1690 0.17 +1.0 1,777,359 + HP15_1690 0.19 +0.0 1,777,364 + HP15_1690 0.19 -0.2 1,777,557 + HP15_1690 0.29 -0.8 1,777,701 + HP15_1690 0.37 +0.9 1,777,806 + HP15_1690 0.42 -0.0 1,777,806 + HP15_1690 0.42 -1.7 1,777,806 + HP15_1690 0.42 -1.3 1,777,814 - HP15_1690 0.43 +0.4 1,777,814 - HP15_1690 0.43 -1.4 1,777,814 - HP15_1690 0.43 -2.0 1,777,814 - HP15_1690 0.43 -1.3 1,777,824 - HP15_1690 0.43 -1.3 1,777,849 + HP15_1690 0.45 -0.1 1,778,109 + HP15_1690 0.59 +0.6 1,778,112 - HP15_1690 0.59 -1.0 1,778,249 + HP15_1690 0.66 -0.3 1,778,330 + HP15_1690 0.70 +0.3 1,778,467 + HP15_1690 0.78 -0.7 1,778,537 - HP15_1690 0.81 +0.5 1,778,542 - HP15_1690 0.82 +0.8 1,778,614 - HP15_1690 0.85 -1.0 1,778,636 + HP15_1690 0.87 -0.5 1,778,737 - -0.4 1,778,798 + -2.7 1,778,870 + -0.1 1,778,931 + -0.3 1,779,118 - -0.1 1,779,247 + +0.8 1,779,292 + -2.9 1,779,292 + +0.2 1,779,332 - -1.3 1,779,332 - +0.0 1,779,572 + HP15_1691 0.16 +0.4 1,779,671 + HP15_1691 0.19 +0.3 1,779,689 + HP15_1691 0.20 -1.3 1,779,689 + HP15_1691 0.20 +0.2 1,779,697 - HP15_1691 0.20 +0.0 1,779,843 - HP15_1691 0.26 +1.0 1,779,852 + HP15_1691 0.26 +0.2 1,779,855 - HP15_1691 0.26 +0.5
Or see this region's nucleotide sequence