Strain Fitness in Marinobacter adhaerens HP15 around HP15_1689

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1688 and HP15_1689 overlap by 4 nucleotidesHP15_1689 and HP15_1690 are separated by 27 nucleotides HP15_1688: HP15_1688 - iron-sulfur cluster-binding protein, at 1,773,535 to 1,774,926 _1688 HP15_1689: HP15_1689 - sensory box/GGDEF family protein, at 1,774,923 to 1,776,980 _1689 HP15_1690: HP15_1690 - glutathione-regulated potassium-efflux system protein KefC, at 1,777,008 to 1,778,888 _1690 Position (kb) 1774 1775 1776 1777Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1774.141 kb on + strand, within HP15_1688at 1774.149 kb on - strand, within HP15_1688at 1774.156 kb on + strand, within HP15_1688at 1774.156 kb on + strand, within HP15_1688at 1774.221 kb on + strand, within HP15_1688at 1774.221 kb on + strand, within HP15_1688at 1774.266 kb on + strand, within HP15_1688at 1774.274 kb on - strand, within HP15_1688at 1774.281 kb on + strand, within HP15_1688at 1774.336 kb on - strand, within HP15_1688at 1774.340 kb on + strand, within HP15_1688at 1774.480 kb on - strand, within HP15_1688at 1774.496 kb on + strand, within HP15_1688at 1774.506 kb on + strand, within HP15_1688at 1774.569 kb on + strand, within HP15_1688at 1774.730 kb on - strand, within HP15_1688at 1774.744 kb on - strand, within HP15_1688at 1774.754 kb on - strand, within HP15_1688at 1774.955 kb on - strandat 1775.058 kb on + strandat 1775.066 kb on - strandat 1775.066 kb on - strandat 1775.106 kb on - strandat 1775.181 kb on - strand, within HP15_1689at 1775.286 kb on + strand, within HP15_1689at 1775.305 kb on - strand, within HP15_1689at 1775.354 kb on + strand, within HP15_1689at 1775.577 kb on - strand, within HP15_1689at 1775.597 kb on + strand, within HP15_1689at 1775.620 kb on - strand, within HP15_1689at 1775.653 kb on + strand, within HP15_1689at 1775.692 kb on + strand, within HP15_1689at 1775.713 kb on + strand, within HP15_1689at 1775.811 kb on - strand, within HP15_1689at 1775.813 kb on + strand, within HP15_1689at 1775.909 kb on - strand, within HP15_1689at 1775.975 kb on + strand, within HP15_1689at 1776.022 kb on - strand, within HP15_1689at 1776.047 kb on - strand, within HP15_1689at 1776.101 kb on + strand, within HP15_1689at 1776.120 kb on + strand, within HP15_1689at 1776.130 kb on + strand, within HP15_1689at 1776.130 kb on + strand, within HP15_1689at 1776.219 kb on - strand, within HP15_1689at 1776.226 kb on + strand, within HP15_1689at 1776.228 kb on + strand, within HP15_1689at 1776.474 kb on + strand, within HP15_1689at 1776.518 kb on - strand, within HP15_1689at 1776.528 kb on + strand, within HP15_1689at 1776.700 kb on + strand, within HP15_1689at 1776.850 kb on + strandat 1776.850 kb on + strandat 1776.850 kb on + strandat 1776.858 kb on - strandat 1776.860 kb on + strandat 1776.975 kb on - strandat 1777.086 kb on - strandat 1777.162 kb on + strandat 1777.206 kb on + strand, within HP15_1690at 1777.215 kb on + strand, within HP15_1690at 1777.336 kb on - strand, within HP15_1690at 1777.359 kb on + strand, within HP15_1690at 1777.364 kb on + strand, within HP15_1690at 1777.557 kb on + strand, within HP15_1690at 1777.701 kb on + strand, within HP15_1690at 1777.806 kb on + strand, within HP15_1690at 1777.806 kb on + strand, within HP15_1690at 1777.806 kb on + strand, within HP15_1690at 1777.814 kb on - strand, within HP15_1690at 1777.814 kb on - strand, within HP15_1690at 1777.814 kb on - strand, within HP15_1690at 1777.814 kb on - strand, within HP15_1690at 1777.824 kb on - strand, within HP15_1690at 1777.849 kb on + strand, within HP15_1690

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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1,774,141 + HP15_1688 0.44 -0.4
1,774,149 - HP15_1688 0.44 -0.7
1,774,156 + HP15_1688 0.45 +0.4
1,774,156 + HP15_1688 0.45 +2.9
1,774,221 + HP15_1688 0.49 -1.1
1,774,221 + HP15_1688 0.49 -0.0
1,774,266 + HP15_1688 0.53 +0.1
1,774,274 - HP15_1688 0.53 -2.3
1,774,281 + HP15_1688 0.54 +0.9
1,774,336 - HP15_1688 0.58 +0.4
1,774,340 + HP15_1688 0.58 -0.3
1,774,480 - HP15_1688 0.68 +0.7
1,774,496 + HP15_1688 0.69 -1.3
1,774,506 + HP15_1688 0.70 -1.0
1,774,569 + HP15_1688 0.74 +0.7
1,774,730 - HP15_1688 0.86 +0.3
1,774,744 - HP15_1688 0.87 +0.2
1,774,754 - HP15_1688 0.88 +1.3
1,774,955 - -0.1
1,775,058 + -0.7
1,775,066 - +0.6
1,775,066 - -0.4
1,775,106 - -0.4
1,775,181 - HP15_1689 0.13 +1.8
1,775,286 + HP15_1689 0.18 +0.5
1,775,305 - HP15_1689 0.19 +0.5
1,775,354 + HP15_1689 0.21 +0.1
1,775,577 - HP15_1689 0.32 -0.4
1,775,597 + HP15_1689 0.33 +0.1
1,775,620 - HP15_1689 0.34 -0.9
1,775,653 + HP15_1689 0.35 -0.1
1,775,692 + HP15_1689 0.37 -0.5
1,775,713 + HP15_1689 0.38 -0.2
1,775,811 - HP15_1689 0.43 -0.0
1,775,813 + HP15_1689 0.43 -2.5
1,775,909 - HP15_1689 0.48 +0.0
1,775,975 + HP15_1689 0.51 +0.3
1,776,022 - HP15_1689 0.53 -1.1
1,776,047 - HP15_1689 0.55 -1.0
1,776,101 + HP15_1689 0.57 -1.9
1,776,120 + HP15_1689 0.58 -1.2
1,776,130 + HP15_1689 0.59 -0.2
1,776,130 + HP15_1689 0.59 -0.7
1,776,219 - HP15_1689 0.63 +0.1
1,776,226 + HP15_1689 0.63 -1.4
1,776,228 + HP15_1689 0.63 -0.4
1,776,474 + HP15_1689 0.75 -0.1
1,776,518 - HP15_1689 0.78 -2.1
1,776,528 + HP15_1689 0.78 +0.1
1,776,700 + HP15_1689 0.86 +0.3
1,776,850 + -0.1
1,776,850 + -0.2
1,776,850 + -0.0
1,776,858 - -0.4
1,776,860 + -0.7
1,776,975 - -0.9
1,777,086 - +1.0
1,777,162 + -0.3
1,777,206 + HP15_1690 0.11 -1.9
1,777,215 + HP15_1690 0.11 -1.2
1,777,336 - HP15_1690 0.17 +1.0
1,777,359 + HP15_1690 0.19 +0.0
1,777,364 + HP15_1690 0.19 -0.2
1,777,557 + HP15_1690 0.29 -0.8
1,777,701 + HP15_1690 0.37 +0.9
1,777,806 + HP15_1690 0.42 -0.0
1,777,806 + HP15_1690 0.42 -1.7
1,777,806 + HP15_1690 0.42 -1.3
1,777,814 - HP15_1690 0.43 +0.4
1,777,814 - HP15_1690 0.43 -1.4
1,777,814 - HP15_1690 0.43 -2.0
1,777,814 - HP15_1690 0.43 -1.3
1,777,824 - HP15_1690 0.43 -1.3
1,777,849 + HP15_1690 0.45 -0.1

Or see this region's nucleotide sequence