Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1327 and HP15_1328 are separated by 196 nucleotides HP15_1328 and HP15_1329 are separated by 106 nucleotides HP15_1329 and HP15_1330 are separated by 223 nucleotides HP15_1330 and HP15_1331 are separated by 41 nucleotides
HP15_1327: HP15_1327 - hypothetical protein, at 1,392,908 to 1,393,261
_1327
HP15_1328: HP15_1328 - nucleoprotein/polynucleotide-associated enzyme, at 1,393,458 to 1,393,994
_1328
HP15_1329: HP15_1329 - DEAD/DEAH box helicase domain protein, at 1,394,101 to 1,395,474
_1329
HP15_1330: HP15_1330 - sodium ion-translocating decarboxylase, at 1,395,698 to 1,395,949
_1330
HP15_1331: HP15_1331 - pyruvate carboxylase subunit B, at 1,395,991 to 1,397,778
_1331
Position (kb)
1394
1395
1396 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1393.180 kb on - strand, within HP15_1327 at 1393.232 kb on - strand at 1393.445 kb on + strand at 1393.453 kb on - strand at 1393.577 kb on + strand, within HP15_1328 at 1393.733 kb on - strand, within HP15_1328 at 1393.845 kb on + strand, within HP15_1328 at 1393.868 kb on - strand, within HP15_1328 at 1394.165 kb on - strand at 1394.195 kb on - strand at 1394.235 kb on + strand at 1394.289 kb on + strand, within HP15_1329 at 1394.320 kb on + strand, within HP15_1329 at 1394.415 kb on + strand, within HP15_1329 at 1394.415 kb on + strand, within HP15_1329 at 1394.473 kb on + strand, within HP15_1329 at 1394.512 kb on + strand, within HP15_1329 at 1394.535 kb on + strand, within HP15_1329 at 1394.629 kb on + strand, within HP15_1329 at 1394.635 kb on + strand, within HP15_1329 at 1394.662 kb on + strand, within HP15_1329 at 1394.717 kb on - strand, within HP15_1329 at 1394.754 kb on + strand, within HP15_1329 at 1394.889 kb on + strand, within HP15_1329 at 1394.932 kb on + strand, within HP15_1329 at 1395.067 kb on + strand, within HP15_1329 at 1395.119 kb on - strand, within HP15_1329 at 1395.121 kb on - strand, within HP15_1329 at 1395.194 kb on + strand, within HP15_1329 at 1395.199 kb on - strand, within HP15_1329 at 1395.203 kb on - strand, within HP15_1329 at 1395.331 kb on - strand, within HP15_1329 at 1395.341 kb on - strand at 1395.375 kb on - strand at 1395.411 kb on + strand at 1395.438 kb on + strand at 1395.446 kb on - strand at 1395.501 kb on - strand at 1395.968 kb on + strand at 1396.439 kb on + strand, within HP15_1331 at 1396.469 kb on + strand, within HP15_1331
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 1,393,180 - HP15_1327 0.77 -0.7 1,393,232 - +0.1 1,393,445 + +1.1 1,393,453 - +0.3 1,393,577 + HP15_1328 0.22 +0.2 1,393,733 - HP15_1328 0.51 +0.3 1,393,845 + HP15_1328 0.72 +0.4 1,393,868 - HP15_1328 0.76 -0.4 1,394,165 - -0.9 1,394,195 - -0.7 1,394,235 + -0.7 1,394,289 + HP15_1329 0.14 -2.3 1,394,320 + HP15_1329 0.16 -0.7 1,394,415 + HP15_1329 0.23 -1.4 1,394,415 + HP15_1329 0.23 -1.5 1,394,473 + HP15_1329 0.27 -0.2 1,394,512 + HP15_1329 0.30 -3.0 1,394,535 + HP15_1329 0.32 -2.4 1,394,629 + HP15_1329 0.38 -0.9 1,394,635 + HP15_1329 0.39 -1.5 1,394,662 + HP15_1329 0.41 -2.6 1,394,717 - HP15_1329 0.45 -2.7 1,394,754 + HP15_1329 0.48 -1.0 1,394,889 + HP15_1329 0.57 -0.9 1,394,932 + HP15_1329 0.60 -0.8 1,395,067 + HP15_1329 0.70 -0.3 1,395,119 - HP15_1329 0.74 -0.3 1,395,121 - HP15_1329 0.74 -3.8 1,395,194 + HP15_1329 0.80 -2.7 1,395,199 - HP15_1329 0.80 -1.0 1,395,203 - HP15_1329 0.80 +0.9 1,395,331 - HP15_1329 0.90 -0.9 1,395,341 - -2.0 1,395,375 - -1.4 1,395,411 + +0.3 1,395,438 + -0.8 1,395,446 - -1.3 1,395,501 - +0.8 1,395,968 + -0.7 1,396,439 + HP15_1331 0.25 -2.4 1,396,469 + HP15_1331 0.27 +0.3
Or see this region's nucleotide sequence