Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_120 and HP15_121 are separated by 287 nucleotides HP15_121 and HP15_122 overlap by 30 nucleotides
HP15_120: HP15_120 - DNA-binding heavy metal response regulator, at 129,399 to 130,085
_120
HP15_121: HP15_121 - transposase, OrfA, at 130,373 to 130,678
_121
HP15_122: HP15_122 - transposase, IS30 family, at 130,649 to 131,818
_122
Position (kb) 130
131 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 129.438 kb on + strand at 129.543 kb on + strand, within HP15_120 at 129.629 kb on + strand, within HP15_120 at 129.659 kb on + strand, within HP15_120 at 129.675 kb on - strand, within HP15_120 at 129.824 kb on - strand, within HP15_120 at 129.865 kb on + strand, within HP15_120 at 129.926 kb on + strand, within HP15_120 at 129.934 kb on - strand, within HP15_120 at 129.934 kb on - strand, within HP15_120 at 130.079 kb on - strand at 130.126 kb on + strand at 130.136 kb on - strand at 130.275 kb on - strand at 130.305 kb on + strand at 130.313 kb on - strand at 130.358 kb on + strand at 130.366 kb on + strand at 130.377 kb on + strand at 130.433 kb on - strand, within HP15_121 at 130.441 kb on + strand, within HP15_121 at 130.441 kb on + strand, within HP15_121 at 130.506 kb on - strand, within HP15_121 at 130.511 kb on - strand, within HP15_121 at 130.554 kb on + strand, within HP15_121 at 130.560 kb on + strand, within HP15_121 at 130.560 kb on + strand, within HP15_121 at 130.568 kb on - strand, within HP15_121 at 130.605 kb on + strand, within HP15_121 at 130.615 kb on + strand, within HP15_121 at 130.624 kb on - strand, within HP15_121 at 130.690 kb on + strand at 130.697 kb on - strand at 130.697 kb on - strand at 130.698 kb on - strand at 130.807 kb on + strand, within HP15_122 at 130.936 kb on - strand, within HP15_122 at 130.938 kb on + strand, within HP15_122 at 130.946 kb on - strand, within HP15_122 at 130.948 kb on - strand, within HP15_122 at 130.966 kb on + strand, within HP15_122 at 130.966 kb on + strand, within HP15_122 at 131.026 kb on + strand, within HP15_122 at 131.026 kb on + strand, within HP15_122 at 131.034 kb on - strand, within HP15_122 at 131.105 kb on + strand, within HP15_122 at 131.113 kb on - strand, within HP15_122 at 131.113 kb on - strand, within HP15_122 at 131.196 kb on + strand, within HP15_122 at 131.198 kb on + strand, within HP15_122 at 131.263 kb on - strand, within HP15_122 at 131.263 kb on - strand, within HP15_122 at 131.265 kb on + strand, within HP15_122 at 131.273 kb on - strand, within HP15_122 at 131.273 kb on - strand, within HP15_122 at 131.374 kb on + strand, within HP15_122 at 131.398 kb on + strand, within HP15_122 at 131.412 kb on + strand, within HP15_122 at 131.446 kb on - strand, within HP15_122 at 131.489 kb on + strand, within HP15_122 at 131.492 kb on - strand, within HP15_122 at 131.497 kb on - strand, within HP15_122 at 131.518 kb on + strand, within HP15_122 at 131.573 kb on + strand, within HP15_122 at 131.583 kb on + strand, within HP15_122 at 131.624 kb on - strand, within HP15_122 at 131.632 kb on + strand, within HP15_122 at 131.648 kb on + strand, within HP15_122
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 129,438 + -1.3 129,543 + HP15_120 0.21 -0.3 129,629 + HP15_120 0.33 -0.7 129,659 + HP15_120 0.38 -1.5 129,675 - HP15_120 0.40 +0.4 129,824 - HP15_120 0.62 -0.9 129,865 + HP15_120 0.68 +0.3 129,926 + HP15_120 0.77 -1.2 129,934 - HP15_120 0.78 -1.2 129,934 - HP15_120 0.78 -1.1 130,079 - +0.6 130,126 + -0.9 130,136 - +0.1 130,275 - -0.5 130,305 + -2.7 130,313 - -0.6 130,358 + +0.6 130,366 + +0.2 130,377 + +0.3 130,433 - HP15_121 0.20 -1.6 130,441 + HP15_121 0.22 -0.1 130,441 + HP15_121 0.22 -1.6 130,506 - HP15_121 0.43 -1.4 130,511 - HP15_121 0.45 -2.6 130,554 + HP15_121 0.59 -1.2 130,560 + HP15_121 0.61 +0.1 130,560 + HP15_121 0.61 -0.6 130,568 - HP15_121 0.64 +0.1 130,605 + HP15_121 0.76 -1.5 130,615 + HP15_121 0.79 +1.2 130,624 - HP15_121 0.82 -1.3 130,690 + -1.1 130,697 - +0.0 130,697 - +0.6 130,698 - -0.1 130,807 + HP15_122 0.14 +0.8 130,936 - HP15_122 0.25 +0.4 130,938 + HP15_122 0.25 -0.1 130,946 - HP15_122 0.25 +0.5 130,948 - HP15_122 0.26 -0.5 130,966 + HP15_122 0.27 -0.5 130,966 + HP15_122 0.27 -0.3 131,026 + HP15_122 0.32 +0.1 131,026 + HP15_122 0.32 +0.3 131,034 - HP15_122 0.33 -1.8 131,105 + HP15_122 0.39 +0.3 131,113 - HP15_122 0.40 +1.0 131,113 - HP15_122 0.40 +0.7 131,196 + HP15_122 0.47 +1.1 131,198 + HP15_122 0.47 +0.5 131,263 - HP15_122 0.52 -0.2 131,263 - HP15_122 0.52 -2.9 131,265 + HP15_122 0.53 +0.4 131,273 - HP15_122 0.53 -0.9 131,273 - HP15_122 0.53 +0.1 131,374 + HP15_122 0.62 -0.3 131,398 + HP15_122 0.64 -1.0 131,412 + HP15_122 0.65 -1.5 131,446 - HP15_122 0.68 +1.0 131,489 + HP15_122 0.72 -1.7 131,492 - HP15_122 0.72 +0.1 131,497 - HP15_122 0.72 +0.0 131,518 + HP15_122 0.74 -1.9 131,573 + HP15_122 0.79 +0.3 131,583 + HP15_122 0.80 -1.0 131,624 - HP15_122 0.83 -0.7 131,632 + HP15_122 0.84 -1.7 131,648 + HP15_122 0.85 +0.3
Or see this region's nucleotide sequence