Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27700 and BWI76_RS27705 are separated by 50 nucleotides BWI76_RS27705 and BWI76_RS27710 are separated by 161 nucleotides
BWI76_RS27700: BWI76_RS27700 - multidrug transporter, at 5,748,464 to 5,749,828
_RS27700
BWI76_RS27705: BWI76_RS27705 - Bcr/CflA family drug resistance efflux transporter, at 5,749,879 to 5,751,045
_RS27705
BWI76_RS27710: BWI76_RS27710 - N-acetylmuramic acid 6-phosphate etherase, at 5,751,207 to 5,752,109
_RS27710
Position (kb) 5749
5750
5751
5752 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5749.015 kb on - strand, within BWI76_RS27700 at 5749.015 kb on - strand, within BWI76_RS27700 at 5749.321 kb on - strand, within BWI76_RS27700 at 5749.351 kb on + strand, within BWI76_RS27700 at 5749.439 kb on - strand, within BWI76_RS27700 at 5749.491 kb on + strand, within BWI76_RS27700 at 5749.638 kb on - strand, within BWI76_RS27700 at 5749.673 kb on + strand, within BWI76_RS27700 at 5749.751 kb on + strand at 5749.986 kb on + strand at 5750.039 kb on + strand, within BWI76_RS27705 at 5750.045 kb on + strand, within BWI76_RS27705 at 5750.045 kb on + strand, within BWI76_RS27705 at 5750.127 kb on - strand, within BWI76_RS27705 at 5750.221 kb on - strand, within BWI76_RS27705 at 5750.221 kb on - strand, within BWI76_RS27705 at 5750.281 kb on + strand, within BWI76_RS27705 at 5750.357 kb on + strand, within BWI76_RS27705 at 5750.396 kb on + strand, within BWI76_RS27705 at 5750.403 kb on - strand at 5750.404 kb on - strand, within BWI76_RS27705 at 5750.521 kb on + strand, within BWI76_RS27705 at 5750.545 kb on - strand, within BWI76_RS27705 at 5750.559 kb on - strand, within BWI76_RS27705 at 5750.636 kb on + strand, within BWI76_RS27705 at 5750.636 kb on + strand, within BWI76_RS27705 at 5750.636 kb on + strand, within BWI76_RS27705 at 5750.644 kb on - strand, within BWI76_RS27705 at 5750.644 kb on - strand, within BWI76_RS27705 at 5750.644 kb on - strand, within BWI76_RS27705 at 5750.741 kb on + strand, within BWI76_RS27705 at 5751.332 kb on - strand, within BWI76_RS27710 at 5751.345 kb on - strand, within BWI76_RS27710 at 5751.574 kb on + strand, within BWI76_RS27710 at 5751.612 kb on + strand, within BWI76_RS27710 at 5751.666 kb on + strand, within BWI76_RS27710 at 5751.800 kb on + strand, within BWI76_RS27710 at 5751.802 kb on - strand, within BWI76_RS27710 at 5751.856 kb on + strand, within BWI76_RS27710 at 5751.866 kb on + strand, within BWI76_RS27710 at 5751.867 kb on + strand, within BWI76_RS27710 at 5751.867 kb on + strand, within BWI76_RS27710 at 5751.867 kb on + strand, within BWI76_RS27710 at 5751.874 kb on - strand, within BWI76_RS27710 at 5751.875 kb on - strand, within BWI76_RS27710
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 20mM remove 5,749,015 - BWI76_RS27700 0.40 -0.1 5,749,015 - BWI76_RS27700 0.40 +2.3 5,749,321 - BWI76_RS27700 0.63 +0.1 5,749,351 + BWI76_RS27700 0.65 -1.0 5,749,439 - BWI76_RS27700 0.71 -0.0 5,749,491 + BWI76_RS27700 0.75 -0.1 5,749,638 - BWI76_RS27700 0.86 +0.4 5,749,673 + BWI76_RS27700 0.89 -1.5 5,749,751 + -0.4 5,749,986 + +0.5 5,750,039 + BWI76_RS27705 0.14 +0.1 5,750,045 + BWI76_RS27705 0.14 +0.5 5,750,045 + BWI76_RS27705 0.14 +0.3 5,750,127 - BWI76_RS27705 0.21 +0.6 5,750,221 - BWI76_RS27705 0.29 -0.7 5,750,221 - BWI76_RS27705 0.29 -1.2 5,750,281 + BWI76_RS27705 0.34 +0.7 5,750,357 + BWI76_RS27705 0.41 +0.4 5,750,396 + BWI76_RS27705 0.44 -0.1 5,750,403 - +1.1 5,750,404 - BWI76_RS27705 0.45 -0.1 5,750,521 + BWI76_RS27705 0.55 +0.6 5,750,545 - BWI76_RS27705 0.57 +0.6 5,750,559 - BWI76_RS27705 0.58 +0.2 5,750,636 + BWI76_RS27705 0.65 -2.0 5,750,636 + BWI76_RS27705 0.65 +0.5 5,750,636 + BWI76_RS27705 0.65 +1.0 5,750,644 - BWI76_RS27705 0.66 +1.1 5,750,644 - BWI76_RS27705 0.66 -0.1 5,750,644 - BWI76_RS27705 0.66 -0.2 5,750,741 + BWI76_RS27705 0.74 +1.3 5,751,332 - BWI76_RS27710 0.14 +0.6 5,751,345 - BWI76_RS27710 0.15 -0.1 5,751,574 + BWI76_RS27710 0.41 +0.5 5,751,612 + BWI76_RS27710 0.45 +0.2 5,751,666 + BWI76_RS27710 0.51 -1.3 5,751,800 + BWI76_RS27710 0.66 -0.6 5,751,802 - BWI76_RS27710 0.66 +0.2 5,751,856 + BWI76_RS27710 0.72 +0.5 5,751,866 + BWI76_RS27710 0.73 +1.6 5,751,867 + BWI76_RS27710 0.73 +0.4 5,751,867 + BWI76_RS27710 0.73 -0.2 5,751,867 + BWI76_RS27710 0.73 +0.7 5,751,874 - BWI76_RS27710 0.74 +0.8 5,751,875 - BWI76_RS27710 0.74 +0.2
Or see this region's nucleotide sequence