Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26370 and BWI76_RS26375 are separated by 150 nucleotides BWI76_RS26375 and BWI76_RS26380 are separated by 117 nucleotides
BWI76_RS26370: BWI76_RS26370 - aromatic amino acid transporter, at 5,457,882 to 5,459,126
_RS26370
BWI76_RS26375: BWI76_RS26375 - aspartate aminotransferase family protein, at 5,459,277 to 5,460,542
_RS26375
BWI76_RS26380: BWI76_RS26380 - decarboxylase, at 5,460,660 to 5,462,174
_RS26380
Position (kb) 5459
5460
5461 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5458.369 kb on - strand, within BWI76_RS26370 at 5458.415 kb on - strand, within BWI76_RS26370 at 5458.416 kb on - strand, within BWI76_RS26370 at 5458.602 kb on - strand, within BWI76_RS26370 at 5458.614 kb on + strand, within BWI76_RS26370 at 5458.614 kb on + strand, within BWI76_RS26370 at 5458.622 kb on - strand, within BWI76_RS26370 at 5458.680 kb on - strand, within BWI76_RS26370 at 5458.903 kb on + strand, within BWI76_RS26370 at 5458.911 kb on - strand, within BWI76_RS26370 at 5459.069 kb on + strand at 5459.077 kb on - strand at 5459.314 kb on + strand at 5459.385 kb on - strand at 5459.523 kb on + strand, within BWI76_RS26375 at 5459.523 kb on + strand, within BWI76_RS26375 at 5459.531 kb on - strand, within BWI76_RS26375 at 5459.531 kb on - strand, within BWI76_RS26375 at 5459.541 kb on - strand, within BWI76_RS26375 at 5459.650 kb on + strand, within BWI76_RS26375 at 5459.669 kb on - strand, within BWI76_RS26375 at 5459.786 kb on - strand, within BWI76_RS26375 at 5459.788 kb on + strand, within BWI76_RS26375 at 5459.835 kb on + strand, within BWI76_RS26375 at 5460.070 kb on + strand at 5460.104 kb on + strand, within BWI76_RS26375 at 5460.111 kb on + strand, within BWI76_RS26375 at 5460.177 kb on - strand, within BWI76_RS26375 at 5460.338 kb on - strand, within BWI76_RS26375 at 5460.390 kb on - strand, within BWI76_RS26375 at 5460.428 kb on + strand at 5460.451 kb on - strand at 5460.493 kb on - strand at 5460.527 kb on + strand at 5460.766 kb on + strand at 5460.954 kb on + strand, within BWI76_RS26380 at 5461.234 kb on - strand, within BWI76_RS26380 at 5461.245 kb on - strand, within BWI76_RS26380 at 5461.283 kb on - strand, within BWI76_RS26380 at 5461.500 kb on - strand, within BWI76_RS26380
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 20mM remove 5,458,369 - BWI76_RS26370 0.39 -0.1 5,458,415 - BWI76_RS26370 0.43 +0.7 5,458,416 - BWI76_RS26370 0.43 -0.0 5,458,602 - BWI76_RS26370 0.58 -0.8 5,458,614 + BWI76_RS26370 0.59 -1.2 5,458,614 + BWI76_RS26370 0.59 -1.1 5,458,622 - BWI76_RS26370 0.59 -0.5 5,458,680 - BWI76_RS26370 0.64 -1.2 5,458,903 + BWI76_RS26370 0.82 -0.2 5,458,911 - BWI76_RS26370 0.83 +0.3 5,459,069 + +0.5 5,459,077 - -0.3 5,459,314 + -0.4 5,459,385 - -0.8 5,459,523 + BWI76_RS26375 0.19 +0.1 5,459,523 + BWI76_RS26375 0.19 +0.4 5,459,531 - BWI76_RS26375 0.20 -0.8 5,459,531 - BWI76_RS26375 0.20 -0.3 5,459,541 - BWI76_RS26375 0.21 -2.6 5,459,650 + BWI76_RS26375 0.29 +0.7 5,459,669 - BWI76_RS26375 0.31 -0.5 5,459,786 - BWI76_RS26375 0.40 +0.0 5,459,788 + BWI76_RS26375 0.40 -1.5 5,459,835 + BWI76_RS26375 0.44 -0.4 5,460,070 + -0.2 5,460,104 + BWI76_RS26375 0.65 +1.3 5,460,111 + BWI76_RS26375 0.66 -0.1 5,460,177 - BWI76_RS26375 0.71 +0.1 5,460,338 - BWI76_RS26375 0.84 -2.6 5,460,390 - BWI76_RS26375 0.88 +0.7 5,460,428 + -1.1 5,460,451 - -0.2 5,460,493 - -3.1 5,460,527 + +0.9 5,460,766 + +0.4 5,460,954 + BWI76_RS26380 0.19 -0.7 5,461,234 - BWI76_RS26380 0.38 +0.3 5,461,245 - BWI76_RS26380 0.39 +0.5 5,461,283 - BWI76_RS26380 0.41 -0.6 5,461,500 - BWI76_RS26380 0.55 -0.3
Or see this region's nucleotide sequence