Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22645 and BWI76_RS22650 are separated by 158 nucleotides BWI76_RS22650 and BWI76_RS22655 are separated by 122 nucleotides BWI76_RS22655 and BWI76_RS22660 overlap by 7 nucleotides
BWI76_RS22645: BWI76_RS22645 - RNA polymerase sigma factor RpoS, at 4,720,103 to 4,721,095
_RS22645
BWI76_RS22650: BWI76_RS22650 - lipoprotein NlpD, at 4,721,254 to 4,722,372
_RS22650
BWI76_RS22655: BWI76_RS22655 - protein-L-isoaspartate O-methyltransferase, at 4,722,495 to 4,723,121
_RS22655
BWI76_RS22660: BWI76_RS22660 - 5'/3'-nucleotidase SurE, at 4,723,115 to 4,723,876
_RS22660
Position (kb) 4721
4722
4723 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4720.258 kb on + strand, within BWI76_RS22645 at 4720.279 kb on - strand, within BWI76_RS22645 at 4720.785 kb on - strand, within BWI76_RS22645 at 4720.919 kb on - strand, within BWI76_RS22645 at 4721.005 kb on - strand at 4721.125 kb on - strand at 4721.329 kb on + strand at 4721.337 kb on - strand at 4721.337 kb on - strand at 4721.344 kb on + strand at 4721.347 kb on - strand at 4721.475 kb on + strand, within BWI76_RS22650 at 4721.526 kb on + strand, within BWI76_RS22650 at 4721.746 kb on + strand, within BWI76_RS22650 at 4721.746 kb on + strand, within BWI76_RS22650 at 4722.010 kb on - strand, within BWI76_RS22650 at 4722.040 kb on - strand, within BWI76_RS22650 at 4722.093 kb on - strand, within BWI76_RS22650 at 4722.199 kb on + strand, within BWI76_RS22650 at 4722.242 kb on + strand, within BWI76_RS22650 at 4722.308 kb on - strand at 4722.378 kb on - strand at 4722.421 kb on + strand at 4722.775 kb on - strand, within BWI76_RS22655 at 4722.799 kb on + strand, within BWI76_RS22655 at 4722.807 kb on - strand, within BWI76_RS22655 at 4722.807 kb on - strand, within BWI76_RS22655 at 4722.901 kb on - strand, within BWI76_RS22655 at 4722.933 kb on + strand, within BWI76_RS22655 at 4722.941 kb on - strand at 4723.281 kb on + strand, within BWI76_RS22660 at 4723.289 kb on - strand, within BWI76_RS22660 at 4723.368 kb on + strand, within BWI76_RS22660
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 20mM remove 4,720,258 + BWI76_RS22645 0.16 +0.3 4,720,279 - BWI76_RS22645 0.18 -0.3 4,720,785 - BWI76_RS22645 0.69 -2.9 4,720,919 - BWI76_RS22645 0.82 -0.7 4,721,005 - -0.7 4,721,125 - -0.3 4,721,329 + -1.0 4,721,337 - -0.3 4,721,337 - -2.7 4,721,344 + -3.1 4,721,347 - -1.8 4,721,475 + BWI76_RS22650 0.20 -2.3 4,721,526 + BWI76_RS22650 0.24 -2.2 4,721,746 + BWI76_RS22650 0.44 -0.7 4,721,746 + BWI76_RS22650 0.44 -0.8 4,722,010 - BWI76_RS22650 0.68 -2.4 4,722,040 - BWI76_RS22650 0.70 -0.6 4,722,093 - BWI76_RS22650 0.75 -1.7 4,722,199 + BWI76_RS22650 0.84 -1.3 4,722,242 + BWI76_RS22650 0.88 -0.3 4,722,308 - -0.1 4,722,378 - -0.1 4,722,421 + -0.0 4,722,775 - BWI76_RS22655 0.45 +0.7 4,722,799 + BWI76_RS22655 0.48 -0.4 4,722,807 - BWI76_RS22655 0.50 -0.1 4,722,807 - BWI76_RS22655 0.50 +0.4 4,722,901 - BWI76_RS22655 0.65 +0.7 4,722,933 + BWI76_RS22655 0.70 +0.2 4,722,941 - -0.3 4,723,281 + BWI76_RS22660 0.22 -0.8 4,723,289 - BWI76_RS22660 0.23 -1.2 4,723,368 + BWI76_RS22660 0.33 -0.2
Or see this region's nucleotide sequence