Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19795 and BWI76_RS19800 are separated by 3 nucleotides BWI76_RS19800 and BWI76_RS19805 are separated by 330 nucleotides BWI76_RS19805 and BWI76_RS19810 overlap by 4 nucleotides BWI76_RS19810 and BWI76_RS19815 are separated by 147 nucleotides
BWI76_RS19795: BWI76_RS19795 - microcin C ABC transporter ATP-binding protein YejF, at 4,139,624 to 4,141,213
_RS19795
BWI76_RS19800: BWI76_RS19800 - hypothetical protein, at 4,141,217 to 4,141,561
_RS19800
BWI76_RS19805: BWI76_RS19805 - Bcr/CflA family multidrug efflux MFS transporter, at 4,141,892 to 4,143,088
_RS19805
BWI76_RS19810: BWI76_RS19810 - 16S rRNA pseudouridine(516) synthase, at 4,143,085 to 4,143,804
_RS19810
BWI76_RS19815: BWI76_RS19815 - ATP-dependent helicase, at 4,143,952 to 4,145,709
_RS19815
Position (kb)
4141
4142
4143
4144 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4140.926 kb on + strand, within BWI76_RS19795 at 4141.032 kb on - strand, within BWI76_RS19795 at 4141.052 kb on - strand, within BWI76_RS19795 at 4141.109 kb on - strand at 4141.152 kb on - strand at 4141.532 kb on + strand at 4142.439 kb on - strand at 4142.620 kb on - strand, within BWI76_RS19805 at 4142.877 kb on - strand, within BWI76_RS19805 at 4143.089 kb on + strand at 4143.760 kb on - strand at 4143.956 kb on + strand at 4143.964 kb on - strand at 4143.964 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 20mM remove 4,140,926 + BWI76_RS19795 0.82 +0.0 4,141,032 - BWI76_RS19795 0.89 -0.7 4,141,052 - BWI76_RS19795 0.90 -0.6 4,141,109 - +1.1 4,141,152 - +0.2 4,141,532 + -0.5 4,142,439 - -0.3 4,142,620 - BWI76_RS19805 0.61 -3.0 4,142,877 - BWI76_RS19805 0.82 -1.7 4,143,089 + -0.7 4,143,760 - -1.8 4,143,956 + -0.1 4,143,964 - +0.1 4,143,964 - -0.1
Or see this region's nucleotide sequence