Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11680

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 20mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11675 and BWI76_RS11680 overlap by 4 nucleotidesBWI76_RS11680 and BWI76_RS11685 overlap by 4 nucleotides BWI76_RS11675: BWI76_RS11675 - arginine N-succinyltransferase, at 2,456,078 to 2,457,112 _RS11675 BWI76_RS11680: BWI76_RS11680 - succinylglutamate-semialdehyde dehydrogenase, at 2,457,109 to 2,458,587 _RS11680 BWI76_RS11685: BWI76_RS11685 - Succinylarginine dihydrolase (EC 3.5.3.23) (from data), at 2,458,584 to 2,459,909 _RS11685 Position (kb) 2457 2458 2459Strain fitness (log2 ratio) -1 0 1at 2456.367 kb on + strand, within BWI76_RS11675at 2456.375 kb on + strand, within BWI76_RS11675at 2456.997 kb on - strand, within BWI76_RS11675at 2457.686 kb on + strand, within BWI76_RS11680at 2457.686 kb on + strand, within BWI76_RS11680at 2457.694 kb on - strand, within BWI76_RS11680at 2458.256 kb on - strand, within BWI76_RS11680at 2459.086 kb on - strand, within BWI76_RS11685at 2459.212 kb on - strand, within BWI76_RS11685at 2459.495 kb on + strand, within BWI76_RS11685

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 20mM
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2,456,367 + BWI76_RS11675 0.28 +0.9
2,456,375 + BWI76_RS11675 0.29 -0.5
2,456,997 - BWI76_RS11675 0.89 +0.8
2,457,686 + BWI76_RS11680 0.39 +0.0
2,457,686 + BWI76_RS11680 0.39 -0.7
2,457,694 - BWI76_RS11680 0.40 +0.0
2,458,256 - BWI76_RS11680 0.78 +1.1
2,459,086 - BWI76_RS11685 0.38 -0.1
2,459,212 - BWI76_RS11685 0.47 +0.1
2,459,495 + BWI76_RS11685 0.69 -0.0

Or see this region's nucleotide sequence