Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08980 and BWI76_RS08985 are separated by 221 nucleotides BWI76_RS08985 and BWI76_RS08990 are separated by 351 nucleotides BWI76_RS08990 and BWI76_RS08995 are separated by 69 nucleotides
BWI76_RS08980: BWI76_RS08980 - DNA starvation/stationary phase protection protein, at 1,892,519 to 1,893,022
_RS08980
BWI76_RS08985: BWI76_RS08985 - threonine/homoserine exporter RhtA, at 1,893,244 to 1,894,131
_RS08985
BWI76_RS08990: BWI76_RS08990 - outer membrane protein X, at 1,894,483 to 1,894,995
_RS08990
BWI76_RS08995: BWI76_RS08995 - sulfatase, at 1,895,065 to 1,896,642
_RS08995
Position (kb)
1893
1894
1895 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1892.449 kb on + strand at 1892.457 kb on - strand at 1892.524 kb on - strand at 1892.683 kb on - strand, within BWI76_RS08980 at 1893.108 kb on + strand at 1893.299 kb on - strand at 1893.461 kb on + strand, within BWI76_RS08985 at 1893.469 kb on - strand, within BWI76_RS08985 at 1893.586 kb on + strand, within BWI76_RS08985 at 1893.950 kb on + strand, within BWI76_RS08985 at 1894.194 kb on - strand at 1894.288 kb on - strand at 1894.372 kb on + strand at 1894.441 kb on + strand at 1894.453 kb on + strand at 1894.507 kb on + strand at 1894.616 kb on - strand, within BWI76_RS08990 at 1894.975 kb on + strand at 1895.102 kb on - strand at 1895.112 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 20mM remove 1,892,449 + +0.7 1,892,457 - +0.8 1,892,524 - +0.5 1,892,683 - BWI76_RS08980 0.33 -0.3 1,893,108 + -0.2 1,893,299 - +0.2 1,893,461 + BWI76_RS08985 0.24 -2.4 1,893,469 - BWI76_RS08985 0.25 -0.6 1,893,586 + BWI76_RS08985 0.39 -2.7 1,893,950 + BWI76_RS08985 0.80 -4.4 1,894,194 - -0.6 1,894,288 - +1.2 1,894,372 + -1.0 1,894,441 + +0.0 1,894,453 + +0.2 1,894,507 + -0.6 1,894,616 - BWI76_RS08990 0.26 -0.8 1,894,975 + +0.0 1,895,102 - +0.4 1,895,112 - +0.4
Or see this region's nucleotide sequence