Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05395 and BWI76_RS05400 are separated by 54 nucleotides BWI76_RS05400 and BWI76_RS05405 are separated by 55 nucleotides BWI76_RS05405 and BWI76_RS05410 are separated by 163 nucleotides BWI76_RS05410 and BWI76_RS05415 are separated by 30 nucleotides
BWI76_RS05395: BWI76_RS05395 - 23S ribosomal RNA, at 1,132,778 to 1,135,705
_RS05395
BWI76_RS05400: BWI76_RS05400 - 5S ribosomal RNA, at 1,135,760 to 1,135,875
_RS05400
BWI76_RS05405: BWI76_RS05405 - tRNA-Asp, at 1,135,931 to 1,136,007
_RS05405
BWI76_RS05410: BWI76_RS05410 - 2,5-didehydrogluconate reductase B, at 1,136,171 to 1,136,974
_RS05410
BWI76_RS05415: BWI76_RS05415 - LysR family transcriptional regulator, at 1,137,005 to 1,137,907
_RS05415
Position (kb)
1136
1137 Strain fitness (log2 ratio)
-2
-1
0
1 at 1136.583 kb on - strand, within BWI76_RS05410 at 1136.637 kb on + strand, within BWI76_RS05410 at 1136.675 kb on + strand, within BWI76_RS05410 at 1136.785 kb on + strand, within BWI76_RS05410 at 1137.065 kb on - strand at 1137.349 kb on + strand, within BWI76_RS05415 at 1137.383 kb on - strand, within BWI76_RS05415 at 1137.448 kb on + strand, within BWI76_RS05415 at 1137.448 kb on + strand at 1137.456 kb on - strand, within BWI76_RS05415 at 1137.456 kb on - strand, within BWI76_RS05415 at 1137.471 kb on - strand, within BWI76_RS05415
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 20mM remove 1,136,583 - BWI76_RS05410 0.51 -2.0 1,136,637 + BWI76_RS05410 0.58 -1.9 1,136,675 + BWI76_RS05410 0.63 -1.4 1,136,785 + BWI76_RS05410 0.76 -1.3 1,137,065 - +0.0 1,137,349 + BWI76_RS05415 0.38 +0.3 1,137,383 - BWI76_RS05415 0.42 +0.2 1,137,448 + BWI76_RS05415 0.49 -0.4 1,137,448 + +0.5 1,137,456 - BWI76_RS05415 0.50 -1.2 1,137,456 - BWI76_RS05415 0.50 +0.6 1,137,471 - BWI76_RS05415 0.52 +0.4
Or see this region's nucleotide sequence