Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04060 and BWI76_RS04065 are separated by 20 nucleotides BWI76_RS04065 and BWI76_RS04070 are separated by 31 nucleotides BWI76_RS04070 and BWI76_RS04075 are separated by 28 nucleotides BWI76_RS04075 and BWI76_RS04080 are separated by 167 nucleotides BWI76_RS04080 and BWI76_RS04085 are separated by 158 nucleotides BWI76_RS04085 and BWI76_RS04090 overlap by 32 nucleotides
BWI76_RS04060: BWI76_RS04060 - hypothetical protein, at 839,511 to 839,750
_RS04060
BWI76_RS04065: BWI76_RS04065 - tRNA-Leu, at 839,771 to 839,857
_RS04065
BWI76_RS04070: BWI76_RS04070 - tRNA-Leu, at 839,889 to 839,975
_RS04070
BWI76_RS04075: BWI76_RS04075 - tRNA-Leu, at 840,004 to 840,090
_RS04075
BWI76_RS04080: BWI76_RS04080 - 16S rRNA (guanine(1207)-N(2))-methyltransferase, at 840,258 to 841,286
_RS04080
BWI76_RS04085: BWI76_RS04085 - DNA polymerase III subunit psi, at 841,445 to 841,858
_RS04085
BWI76_RS04090: BWI76_RS04090 - ribosomal-protein-alanine N-acetyltransferase RimI, at 841,827 to 842,273
_RS04090
Position (kb) 840
841
842 Strain fitness (log2 ratio) -1
0
1 at 839.289 kb on - strand at 839.292 kb on + strand at 839.386 kb on + strand at 839.398 kb on + strand at 839.422 kb on + strand at 839.422 kb on + strand at 839.422 kb on + strand at 839.422 kb on + strand at 839.430 kb on - strand at 839.430 kb on - strand at 839.430 kb on - strand at 839.531 kb on - strand at 839.555 kb on - strand, within BWI76_RS04060 at 839.638 kb on - strand, within BWI76_RS04060 at 839.697 kb on + strand, within BWI76_RS04060 at 840.292 kb on - strand at 840.764 kb on - strand, within BWI76_RS04080 at 840.808 kb on + strand, within BWI76_RS04080 at 840.808 kb on + strand, within BWI76_RS04080 at 840.816 kb on - strand, within BWI76_RS04080 at 840.816 kb on - strand, within BWI76_RS04080 at 840.863 kb on + strand, within BWI76_RS04080 at 840.930 kb on + strand, within BWI76_RS04080 at 840.933 kb on - strand, within BWI76_RS04080 at 840.938 kb on - strand, within BWI76_RS04080 at 840.966 kb on + strand, within BWI76_RS04080 at 841.008 kb on + strand, within BWI76_RS04080 at 841.021 kb on + strand, within BWI76_RS04080 at 841.124 kb on + strand, within BWI76_RS04080 at 841.173 kb on + strand, within BWI76_RS04080 at 841.271 kb on + strand at 841.857 kb on + strand at 841.983 kb on + strand, within BWI76_RS04090 at 842.066 kb on + strand, within BWI76_RS04090 at 842.076 kb on - strand, within BWI76_RS04090 at 842.128 kb on + strand, within BWI76_RS04090 at 842.143 kb on + strand, within BWI76_RS04090
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 20mM remove 839,289 - -0.4 839,292 + -0.3 839,386 + +0.1 839,398 + +1.3 839,422 + -1.2 839,422 + +0.2 839,422 + -0.1 839,422 + +0.3 839,430 - +1.2 839,430 - +0.6 839,430 - +0.9 839,531 - -0.9 839,555 - BWI76_RS04060 0.18 +0.2 839,638 - BWI76_RS04060 0.53 -0.9 839,697 + BWI76_RS04060 0.78 +1.0 840,292 - -0.1 840,764 - BWI76_RS04080 0.49 -0.4 840,808 + BWI76_RS04080 0.53 -0.7 840,808 + BWI76_RS04080 0.53 -0.5 840,816 - BWI76_RS04080 0.54 -0.3 840,816 - BWI76_RS04080 0.54 -1.1 840,863 + BWI76_RS04080 0.59 -0.5 840,930 + BWI76_RS04080 0.65 +0.7 840,933 - BWI76_RS04080 0.66 -0.0 840,938 - BWI76_RS04080 0.66 -0.7 840,966 + BWI76_RS04080 0.69 +1.2 841,008 + BWI76_RS04080 0.73 -0.8 841,021 + BWI76_RS04080 0.74 +1.3 841,124 + BWI76_RS04080 0.84 +0.3 841,173 + BWI76_RS04080 0.89 -0.5 841,271 + +0.2 841,857 + -0.9 841,983 + BWI76_RS04090 0.35 +0.0 842,066 + BWI76_RS04090 0.53 +0.5 842,076 - BWI76_RS04090 0.56 -0.4 842,128 + BWI76_RS04090 0.67 -0.1 842,143 + BWI76_RS04090 0.71 +1.3
Or see this region's nucleotide sequence