Experiment: Formate/Acetate-Sulfate (30/30-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0366 and DVU0367 are separated by 266 nucleotides DVU0367 and tRNA-Met are separated by 143 nucleotides tRNA-Met and DVU0368 are separated by 692 nucleotides
DVU0366: DVU0366 - 5-formyltetrahydrofolate cyclo-ligase family protein (TIGR), at 415,077 to 415,928
DVU0366
DVU0367: DVU0367 - Ser/Thr protein phosphatase family protein (TIGR), at 416,195 to 416,929
DVU0367
DVU_tRNA-Met-1: tRNA-Met - tRNA with anticodon CAT for Met (VIMSS-AUTO), at 417,073 to 417,149
tRNA-Met
DVU0368: DVU0368 - hypothetical protein (TIGR), at 417,842 to 417,946
DVU0368
Position (kb) 416
417 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 415.335 kb on + strand, within DVU0366 at 415.335 kb on + strand, within DVU0366 at 415.343 kb on - strand, within DVU0366 at 415.395 kb on - strand, within DVU0366 at 415.395 kb on - strand, within DVU0366 at 415.400 kb on + strand, within DVU0366 at 415.408 kb on - strand, within DVU0366 at 415.433 kb on - strand, within DVU0366 at 415.440 kb on + strand, within DVU0366 at 415.448 kb on - strand, within DVU0366 at 415.466 kb on + strand, within DVU0366 at 415.513 kb on + strand, within DVU0366 at 415.526 kb on + strand, within DVU0366 at 415.537 kb on + strand, within DVU0366 at 415.590 kb on + strand, within DVU0366 at 415.663 kb on + strand, within DVU0366 at 415.676 kb on - strand, within DVU0366 at 415.742 kb on - strand, within DVU0366 at 415.785 kb on - strand, within DVU0366 at 415.814 kb on + strand, within DVU0366 at 415.846 kb on - strand at 415.880 kb on + strand at 415.937 kb on - strand at 416.058 kb on + strand at 416.081 kb on - strand at 416.097 kb on + strand at 416.146 kb on - strand at 416.146 kb on - strand at 416.273 kb on - strand, within DVU0367 at 416.313 kb on - strand, within DVU0367 at 416.313 kb on - strand, within DVU0367 at 416.376 kb on + strand, within DVU0367 at 416.405 kb on - strand, within DVU0367 at 416.485 kb on - strand, within DVU0367 at 416.498 kb on - strand, within DVU0367 at 416.552 kb on - strand, within DVU0367 at 416.559 kb on + strand, within DVU0367 at 416.567 kb on + strand, within DVU0367 at 416.604 kb on + strand, within DVU0367 at 416.615 kb on - strand, within DVU0367 at 416.636 kb on - strand, within DVU0367 at 416.686 kb on + strand, within DVU0367 at 416.687 kb on + strand, within DVU0367 at 416.695 kb on - strand, within DVU0367 at 416.708 kb on + strand, within DVU0367 at 416.720 kb on + strand, within DVU0367 at 416.738 kb on - strand, within DVU0367 at 416.767 kb on - strand, within DVU0367 at 416.813 kb on - strand, within DVU0367 at 416.839 kb on - strand, within DVU0367 at 416.847 kb on - strand, within DVU0367 at 416.847 kb on - strand, within DVU0367 at 416.945 kb on + strand at 416.945 kb on + strand at 417.205 kb on + strand at 417.213 kb on - strand at 417.274 kb on - strand at 417.283 kb on + strand at 417.285 kb on - strand at 417.308 kb on + strand at 417.398 kb on - strand at 417.435 kb on + strand at 417.497 kb on + strand at 417.619 kb on - strand at 417.619 kb on - strand at 417.628 kb on - strand at 417.715 kb on - strand at 417.749 kb on + strand at 417.784 kb on + strand at 417.785 kb on + strand at 417.793 kb on - strand at 417.793 kb on - strand at 417.814 kb on + strand at 417.814 kb on + strand at 417.815 kb on + strand at 417.822 kb on - strand at 417.822 kb on - strand at 417.822 kb on - strand at 417.913 kb on + strand, within DVU0368 at 417.921 kb on - strand, within DVU0368
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (30/30-30 mM) remove 415,335 + DVU0366 0.30 +0.0 415,335 + DVU0366 0.30 -0.4 415,343 - DVU0366 0.31 -0.3 415,395 - DVU0366 0.37 -1.9 415,395 - DVU0366 0.37 -0.3 415,400 + DVU0366 0.38 +0.3 415,408 - DVU0366 0.39 -1.9 415,433 - DVU0366 0.42 +0.2 415,440 + DVU0366 0.43 +0.3 415,448 - DVU0366 0.44 -0.0 415,466 + DVU0366 0.46 +0.2 415,513 + DVU0366 0.51 +0.4 415,526 + DVU0366 0.53 +0.1 415,537 + DVU0366 0.54 -0.9 415,590 + DVU0366 0.60 +0.5 415,663 + DVU0366 0.69 -1.1 415,676 - DVU0366 0.70 +0.1 415,742 - DVU0366 0.78 -0.3 415,785 - DVU0366 0.83 +0.7 415,814 + DVU0366 0.87 -0.3 415,846 - -0.2 415,880 + -0.0 415,937 - +0.4 416,058 + +0.2 416,081 - -1.5 416,097 + -0.3 416,146 - -0.3 416,146 - -0.2 416,273 - DVU0367 0.11 -2.8 416,313 - DVU0367 0.16 +0.3 416,313 - DVU0367 0.16 -0.8 416,376 + DVU0367 0.25 -1.3 416,405 - DVU0367 0.29 -0.1 416,485 - DVU0367 0.39 -0.4 416,498 - DVU0367 0.41 -0.3 416,552 - DVU0367 0.49 -1.1 416,559 + DVU0367 0.50 -0.7 416,567 + DVU0367 0.51 -0.5 416,604 + DVU0367 0.56 +0.1 416,615 - DVU0367 0.57 -0.5 416,636 - DVU0367 0.60 +0.0 416,686 + DVU0367 0.67 -0.2 416,687 + DVU0367 0.67 +0.3 416,695 - DVU0367 0.68 -0.2 416,708 + DVU0367 0.70 -0.3 416,720 + DVU0367 0.71 +0.1 416,738 - DVU0367 0.74 -0.7 416,767 - DVU0367 0.78 -1.1 416,813 - DVU0367 0.84 -0.3 416,839 - DVU0367 0.88 -0.7 416,847 - DVU0367 0.89 -0.8 416,847 - DVU0367 0.89 -0.3 416,945 + -1.0 416,945 + +0.5 417,205 + -2.4 417,213 - -0.6 417,274 - -0.5 417,283 + +0.3 417,285 - +0.1 417,308 + +0.2 417,398 - -0.7 417,435 + -0.2 417,497 + +0.3 417,619 - -0.1 417,619 - -0.3 417,628 - +0.3 417,715 - -0.1 417,749 + +0.1 417,784 + -0.2 417,785 + -0.1 417,793 - +0.1 417,793 - -0.9 417,814 + +0.2 417,814 + +0.3 417,815 + -2.8 417,822 - -0.7 417,822 - -1.4 417,822 - -0.2 417,913 + DVU0368 0.68 -0.2 417,921 - DVU0368 0.75 +0.3
Or see this region's nucleotide sequence