Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1338
Experiment: Formate/Acetate-Sulfate (30/30-30 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfate (30/30-30 mM) |
---|---|---|---|---|---|
remove | |||||
1,414,973 | + | lon | DVU1337 | 0.69 | -0.2 |
1,415,359 | + | lon | DVU1337 | 0.85 | -0.5 |
1,415,415 | + | lon | DVU1337 | 0.87 | +0.0 |
1,415,482 | + | -0.5 | |||
1,415,562 | + | -0.7 | |||
1,415,562 | + | -1.1 | |||
1,415,686 | - | -0.8 | |||
1,415,701 | - | -0.1 | |||
1,415,940 | - | +0.3 | |||
1,416,080 | + | DVU1338 | 0.33 | +0.1 | |
1,416,249 | - | DVU1338 | 0.62 | +0.5 | |
1,416,372 | - | DVU1338 | 0.83 | -0.4 | |
1,416,372 | - | DVU1338 | 0.83 | -0.5 | |
1,416,475 | - | -0.5 | |||
1,416,575 | + | DORF10632 | 0.32 | +0.1 | |
1,416,583 | - | DORF10632 | 0.35 | -0.0 | |
1,416,646 | - | DORF10632 | 0.57 | -0.1 | |
1,416,659 | + | DORF10632 | 0.61 | +0.0 | |
1,416,769 | - | +1.4 | |||
1,416,817 | - | +0.1 | |||
1,416,945 | + | DVU1339 | 0.21 | -0.1 | |
1,416,947 | + | DVU1339 | 0.21 | +0.3 | |
1,416,955 | - | DVU1339 | 0.22 | +0.0 | |
1,417,001 | + | DVU1339 | 0.27 | +0.4 | |
1,417,040 | - | DVU1339 | 0.32 | -0.2 | |
1,417,056 | + | DVU1339 | 0.34 | -1.5 | |
1,417,057 | + | DVU1339 | 0.34 | +0.2 | |
1,417,259 | - | DVU1339 | 0.58 | +1.0 | |
1,417,315 | - | DVU1339 | 0.65 | +1.0 | |
1,417,315 | - | DVU1339 | 0.65 | -0.7 | |
1,417,386 | + | DVU1339 | 0.74 | +0.3 | |
1,417,431 | - | DVU1339 | 0.79 | +0.0 | |
1,417,452 | + | DVU1339 | 0.82 | +0.0 |
Or see this region's nucleotide sequence