Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_765 and Pf6N2E2_766 are separated by 58 nucleotides Pf6N2E2_766 and Pf6N2E2_767 are separated by 236 nucleotides Pf6N2E2_767 and Pf6N2E2_768 are separated by 71 nucleotides Pf6N2E2_768 and Pf6N2E2_769 are separated by 1 nucleotides
Pf6N2E2_765 - Fap system putative outer membrane protein, at 876,839 to 877,585
_765
Pf6N2E2_766 - Fap protein with C39 domain, at 877,644 to 878,324
_766
Pf6N2E2_767 - Fap amyloid fibril major component, at 878,561 to 879,541
_767
Pf6N2E2_768 - Fap amyloid fibril minor component, at 879,613 to 880,206
_768
Pf6N2E2_769 - Fap unknown function protein, at 880,208 to 880,654
_769
Position (kb) 878
879
880 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 877.618 kb on + strand at 877.618 kb on + strand at 877.622 kb on + strand at 877.622 kb on + strand at 877.622 kb on + strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.663 kb on - strand at 877.771 kb on + strand, within Pf6N2E2_766 at 877.834 kb on + strand, within Pf6N2E2_766 at 877.867 kb on + strand, within Pf6N2E2_766 at 877.894 kb on - strand, within Pf6N2E2_766 at 877.920 kb on + strand, within Pf6N2E2_766 at 878.014 kb on + strand, within Pf6N2E2_766 at 878.014 kb on + strand, within Pf6N2E2_766 at 878.119 kb on + strand, within Pf6N2E2_766 at 878.331 kb on + strand at 878.338 kb on - strand at 878.562 kb on + strand at 878.562 kb on + strand at 878.562 kb on + strand at 878.563 kb on - strand at 878.563 kb on - strand at 878.563 kb on - strand at 878.860 kb on + strand, within Pf6N2E2_767 at 878.892 kb on + strand, within Pf6N2E2_767 at 878.892 kb on + strand, within Pf6N2E2_767 at 878.892 kb on + strand, within Pf6N2E2_767 at 878.892 kb on + strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.919 kb on + strand, within Pf6N2E2_767 at 879.135 kb on + strand, within Pf6N2E2_767 at 879.135 kb on + strand, within Pf6N2E2_767 at 879.135 kb on + strand, within Pf6N2E2_767 at 879.135 kb on + strand, within Pf6N2E2_767 at 879.136 kb on - strand, within Pf6N2E2_767 at 879.136 kb on - strand, within Pf6N2E2_767 at 879.136 kb on - strand, within Pf6N2E2_767 at 879.145 kb on + strand, within Pf6N2E2_767 at 879.191 kb on - strand, within Pf6N2E2_767 at 879.191 kb on - strand, within Pf6N2E2_767 at 879.268 kb on + strand, within Pf6N2E2_767 at 879.464 kb on - strand at 879.464 kb on - strand at 879.544 kb on + strand at 879.544 kb on + strand at 879.544 kb on + strand at 879.544 kb on + strand at 879.544 kb on + strand at 879.544 kb on + strand at 879.545 kb on - strand at 879.545 kb on - strand at 879.545 kb on - strand at 879.580 kb on + strand at 879.581 kb on - strand at 879.581 kb on - strand at 879.590 kb on + strand at 879.590 kb on + strand at 879.590 kb on + strand at 879.590 kb on + strand at 879.590 kb on + strand at 879.591 kb on - strand at 879.598 kb on + strand at 879.598 kb on + strand at 879.598 kb on + strand at 879.598 kb on + strand at 879.599 kb on - strand at 879.599 kb on - strand at 879.599 kb on - strand at 879.599 kb on - strand at 879.599 kb on - strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.603 kb on - strand at 879.603 kb on - strand at 879.603 kb on - strand at 879.686 kb on - strand, within Pf6N2E2_768 at 880.082 kb on + strand, within Pf6N2E2_768 at 880.082 kb on + strand, within Pf6N2E2_768 at 880.082 kb on + strand, within Pf6N2E2_768 at 880.082 kb on + strand, within Pf6N2E2_768 at 880.144 kb on + strand, within Pf6N2E2_768 at 880.144 kb on + strand, within Pf6N2E2_768 at 880.145 kb on - strand, within Pf6N2E2_768 at 880.145 kb on - strand, within Pf6N2E2_768 at 880.206 kb on + strand at 880.207 kb on - strand at 880.207 kb on - strand at 880.207 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 877,618 + +1.1 877,618 + +1.2 877,622 + +0.4 877,622 + -1.9 877,622 + -0.4 877,623 - -0.1 877,623 - -0.5 877,623 - +1.0 877,623 - -0.8 877,623 - -0.8 877,623 - +1.4 877,663 - +0.5 877,771 + Pf6N2E2_766 0.19 -1.3 877,834 + Pf6N2E2_766 0.28 -2.1 877,867 + Pf6N2E2_766 0.33 -2.1 877,894 - Pf6N2E2_766 0.37 -2.3 877,920 + Pf6N2E2_766 0.41 -1.3 878,014 + Pf6N2E2_766 0.54 +1.3 878,014 + Pf6N2E2_766 0.54 -0.0 878,119 + Pf6N2E2_766 0.70 +1.3 878,331 + -0.1 878,338 - -0.2 878,562 + -0.0 878,562 + +2.0 878,562 + +0.6 878,563 - +1.1 878,563 - +0.1 878,563 - -0.4 878,860 + Pf6N2E2_767 0.30 -0.7 878,892 + Pf6N2E2_767 0.34 -2.2 878,892 + Pf6N2E2_767 0.34 -0.4 878,892 + Pf6N2E2_767 0.34 +0.3 878,892 + Pf6N2E2_767 0.34 -3.7 878,893 - Pf6N2E2_767 0.34 +0.7 878,893 - Pf6N2E2_767 0.34 -3.3 878,893 - Pf6N2E2_767 0.34 +3.1 878,893 - Pf6N2E2_767 0.34 -1.7 878,893 - Pf6N2E2_767 0.34 -2.1 878,893 - Pf6N2E2_767 0.34 -1.2 878,893 - Pf6N2E2_767 0.34 -0.6 878,919 + Pf6N2E2_767 0.36 -2.2 879,135 + Pf6N2E2_767 0.59 +0.6 879,135 + Pf6N2E2_767 0.59 +1.0 879,135 + Pf6N2E2_767 0.59 -1.0 879,135 + Pf6N2E2_767 0.59 +0.4 879,136 - Pf6N2E2_767 0.59 +1.1 879,136 - Pf6N2E2_767 0.59 +0.0 879,136 - Pf6N2E2_767 0.59 -1.7 879,145 + Pf6N2E2_767 0.60 -0.2 879,191 - Pf6N2E2_767 0.64 +1.1 879,191 - Pf6N2E2_767 0.64 +1.4 879,268 + Pf6N2E2_767 0.72 -2.9 879,464 - +0.0 879,464 - -2.3 879,544 + -0.3 879,544 + -0.4 879,544 + +0.7 879,544 + -0.3 879,544 + -0.3 879,544 + -2.2 879,545 - +1.2 879,545 - -1.1 879,545 - -0.5 879,580 + +1.1 879,581 - +1.2 879,581 - -0.7 879,590 + -0.6 879,590 + +2.0 879,590 + +1.3 879,590 + -1.1 879,590 + +0.9 879,591 - +1.1 879,598 + +0.7 879,598 + -1.8 879,598 + +0.2 879,598 + -0.3 879,599 - -1.4 879,599 - -2.4 879,599 - -3.2 879,599 - -1.4 879,599 - -2.4 879,602 + +0.3 879,602 + -0.8 879,602 + -1.2 879,602 + +2.2 879,602 + +0.7 879,602 + +0.4 879,602 + +0.8 879,602 + +1.6 879,602 + +0.5 879,602 + +0.9 879,602 + +1.3 879,603 - -1.0 879,603 - -0.3 879,603 - -1.7 879,686 - Pf6N2E2_768 0.12 +0.5 880,082 + Pf6N2E2_768 0.79 +1.5 880,082 + Pf6N2E2_768 0.79 +2.2 880,082 + Pf6N2E2_768 0.79 -1.2 880,082 + Pf6N2E2_768 0.79 -2.3 880,144 + Pf6N2E2_768 0.89 -1.4 880,144 + Pf6N2E2_768 0.89 -1.0 880,145 - Pf6N2E2_768 0.90 -0.3 880,145 - Pf6N2E2_768 0.90 +1.2 880,206 + -0.3 880,207 - -0.2 880,207 - -0.1 880,207 - -0.8
Or see this region's nucleotide sequence