Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24040

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS24030 and BWI76_RS24035 are separated by 8 nucleotidesBWI76_RS24035 and BWI76_RS24040 are separated by 118 nucleotidesBWI76_RS24040 and BWI76_RS24045 are separated by 15 nucleotidesBWI76_RS24045 and BWI76_RS24050 are separated by 62 nucleotides BWI76_RS24030: BWI76_RS24030 - arginine decarboxylase, at 5,015,360 to 5,017,336 _RS24030 BWI76_RS24035: BWI76_RS24035 - hypothetical protein, at 5,017,345 to 5,017,491 _RS24035 BWI76_RS24040: BWI76_RS24040 - hypothetical protein, at 5,017,610 to 5,017,855 _RS24040 BWI76_RS24045: BWI76_RS24045 - hypothetical protein, at 5,017,871 to 5,018,116 _RS24045 BWI76_RS24050: BWI76_RS24050 - methionine adenosyltransferase, at 5,018,179 to 5,019,333 _RS24050 Position (kb) 5017 5018Strain fitness (log2 ratio) -2 -1 0 1at 5016.881 kb on - strand, within BWI76_RS24030at 5016.923 kb on - strand, within BWI76_RS24030at 5016.949 kb on + strand, within BWI76_RS24030at 5017.062 kb on + strand, within BWI76_RS24030at 5017.096 kb on - strand, within BWI76_RS24030at 5017.314 kb on + strandat 5017.322 kb on - strandat 5017.408 kb on + strand, within BWI76_RS24035at 5017.408 kb on + strand, within BWI76_RS24035at 5017.416 kb on - strand, within BWI76_RS24035at 5017.433 kb on + strand, within BWI76_RS24035at 5017.446 kb on - strand, within BWI76_RS24035at 5017.497 kb on - strandat 5017.503 kb on + strandat 5017.503 kb on + strandat 5017.511 kb on - strandat 5017.511 kb on - strandat 5017.511 kb on - strandat 5017.511 kb on - strandat 5017.563 kb on - strandat 5017.592 kb on + strandat 5017.602 kb on - strandat 5017.620 kb on - strandat 5017.620 kb on - strandat 5017.629 kb on + strandat 5017.651 kb on - strand, within BWI76_RS24040at 5017.724 kb on + strand, within BWI76_RS24040at 5017.756 kb on + strand, within BWI76_RS24040at 5017.829 kb on - strand, within BWI76_RS24040at 5017.868 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM
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5,016,881 - BWI76_RS24030 0.77 -0.6
5,016,923 - BWI76_RS24030 0.79 -0.5
5,016,949 + BWI76_RS24030 0.80 +0.2
5,017,062 + BWI76_RS24030 0.86 +0.0
5,017,096 - BWI76_RS24030 0.88 +0.7
5,017,314 + +0.5
5,017,322 - -0.1
5,017,408 + BWI76_RS24035 0.43 +1.1
5,017,408 + BWI76_RS24035 0.43 +0.6
5,017,416 - BWI76_RS24035 0.48 -0.2
5,017,433 + BWI76_RS24035 0.60 -0.3
5,017,446 - BWI76_RS24035 0.69 -1.1
5,017,497 - -0.5
5,017,503 + -0.5
5,017,503 + +1.2
5,017,511 - +0.0
5,017,511 - -0.1
5,017,511 - -2.0
5,017,511 - +1.1
5,017,563 - +1.3
5,017,592 + +0.4
5,017,602 - +0.3
5,017,620 - -0.0
5,017,620 - -1.0
5,017,629 + -0.0
5,017,651 - BWI76_RS24040 0.17 -2.0
5,017,724 + BWI76_RS24040 0.46 -1.2
5,017,756 + BWI76_RS24040 0.59 -2.1
5,017,829 - BWI76_RS24040 0.89 -0.0
5,017,868 + -0.7

Or see this region's nucleotide sequence