Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23270 and BWI76_RS23275 are separated by 12 nucleotides BWI76_RS23275 and BWI76_RS23280 are separated by 39 nucleotides BWI76_RS23280 and BWI76_RS23285 are separated by 219 nucleotides BWI76_RS23285 and BWI76_RS23290 are separated by 16 nucleotides
BWI76_RS23270: BWI76_RS23270 - phosphoenolpyruvate--protein phosphotransferase PtsP, at 4,854,084 to 4,856,330
_RS23270
BWI76_RS23275: BWI76_RS23275 - RNA pyrophosphohydrolase, at 4,856,343 to 4,856,873
_RS23275
BWI76_RS23280: BWI76_RS23280 - hypothetical protein, at 4,856,913 to 4,857,095
_RS23280
BWI76_RS23285: BWI76_RS23285 - hypothetical protein, at 4,857,315 to 4,857,539
_RS23285
BWI76_RS23290: BWI76_RS23290 - DNA mismatch repair protein MutH, at 4,857,556 to 4,858,248
_RS23290
Position (kb) 4856
4857 Strain fitness (log2 ratio) -2
-1
0
1 at 4855.370 kb on + strand, within BWI76_RS23270 at 4855.473 kb on - strand, within BWI76_RS23270 at 4855.601 kb on + strand, within BWI76_RS23270 at 4855.717 kb on + strand, within BWI76_RS23270 at 4855.935 kb on - strand, within BWI76_RS23270 at 4856.079 kb on - strand, within BWI76_RS23270 at 4856.334 kb on - strand at 4856.389 kb on - strand at 4856.929 kb on + strand at 4856.995 kb on + strand, within BWI76_RS23280 at 4857.274 kb on - strand at 4857.369 kb on + strand, within BWI76_RS23285 at 4857.584 kb on - strand at 4857.656 kb on + strand, within BWI76_RS23290 at 4857.840 kb on - strand, within BWI76_RS23290 at 4857.853 kb on + strand, within BWI76_RS23290
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM remove 4,855,370 + BWI76_RS23270 0.57 -0.5 4,855,473 - BWI76_RS23270 0.62 -0.5 4,855,601 + BWI76_RS23270 0.68 -0.4 4,855,717 + BWI76_RS23270 0.73 -1.8 4,855,935 - BWI76_RS23270 0.82 -2.1 4,856,079 - BWI76_RS23270 0.89 -1.6 4,856,334 - +0.6 4,856,389 - +1.0 4,856,929 + -0.4 4,856,995 + BWI76_RS23280 0.45 -0.2 4,857,274 - +1.4 4,857,369 + BWI76_RS23285 0.24 -0.2 4,857,584 - +0.0 4,857,656 + BWI76_RS23290 0.14 +0.2 4,857,840 - BWI76_RS23290 0.41 +0.2 4,857,853 + BWI76_RS23290 0.43 -0.1
Or see this region's nucleotide sequence