Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23265 and BWI76_RS23270 are separated by 227 nucleotides BWI76_RS23270 and BWI76_RS23275 are separated by 12 nucleotides BWI76_RS23275 and BWI76_RS23280 are separated by 39 nucleotides BWI76_RS23280 and BWI76_RS23285 are separated by 219 nucleotides
BWI76_RS23265: BWI76_RS23265 - hypothetical protein, at 4,852,180 to 4,853,856
_RS23265
BWI76_RS23270: BWI76_RS23270 - phosphoenolpyruvate--protein phosphotransferase PtsP, at 4,854,084 to 4,856,330
_RS23270
BWI76_RS23275: BWI76_RS23275 - RNA pyrophosphohydrolase, at 4,856,343 to 4,856,873
_RS23275
BWI76_RS23280: BWI76_RS23280 - hypothetical protein, at 4,856,913 to 4,857,095
_RS23280
BWI76_RS23285: BWI76_RS23285 - hypothetical protein, at 4,857,315 to 4,857,539
_RS23285
Position (kb)
4854
4855
4856
4857 Strain fitness (log2 ratio)
-2
-1
0
1 at 4854.079 kb on - strand at 4854.670 kb on + strand, within BWI76_RS23270 at 4854.740 kb on + strand, within BWI76_RS23270 at 4854.877 kb on + strand, within BWI76_RS23270 at 4854.885 kb on - strand, within BWI76_RS23270 at 4854.885 kb on - strand, within BWI76_RS23270 at 4854.992 kb on + strand, within BWI76_RS23270 at 4855.076 kb on - strand, within BWI76_RS23270 at 4855.181 kb on + strand, within BWI76_RS23270 at 4855.181 kb on + strand, within BWI76_RS23270 at 4855.189 kb on - strand, within BWI76_RS23270 at 4855.189 kb on - strand, within BWI76_RS23270 at 4855.329 kb on + strand, within BWI76_RS23270 at 4855.370 kb on + strand, within BWI76_RS23270 at 4855.473 kb on - strand, within BWI76_RS23270 at 4855.601 kb on + strand, within BWI76_RS23270 at 4855.717 kb on + strand, within BWI76_RS23270 at 4855.935 kb on - strand, within BWI76_RS23270 at 4856.079 kb on - strand, within BWI76_RS23270 at 4856.334 kb on - strand at 4856.389 kb on - strand at 4856.929 kb on + strand at 4856.995 kb on + strand, within BWI76_RS23280 at 4857.274 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM remove 4,854,079 - -0.6 4,854,670 + BWI76_RS23270 0.26 -2.3 4,854,740 + BWI76_RS23270 0.29 -2.6 4,854,877 + BWI76_RS23270 0.35 -0.1 4,854,885 - BWI76_RS23270 0.36 -1.2 4,854,885 - BWI76_RS23270 0.36 -0.7 4,854,992 + BWI76_RS23270 0.40 -0.4 4,855,076 - BWI76_RS23270 0.44 -1.1 4,855,181 + BWI76_RS23270 0.49 -2.2 4,855,181 + BWI76_RS23270 0.49 +0.0 4,855,189 - BWI76_RS23270 0.49 -1.1 4,855,189 - BWI76_RS23270 0.49 -1.5 4,855,329 + BWI76_RS23270 0.55 -1.6 4,855,370 + BWI76_RS23270 0.57 -0.5 4,855,473 - BWI76_RS23270 0.62 -0.5 4,855,601 + BWI76_RS23270 0.68 -0.4 4,855,717 + BWI76_RS23270 0.73 -1.8 4,855,935 - BWI76_RS23270 0.82 -2.1 4,856,079 - BWI76_RS23270 0.89 -1.6 4,856,334 - +0.6 4,856,389 - +1.0 4,856,929 + -0.4 4,856,995 + BWI76_RS23280 0.45 -0.2 4,857,274 - +1.4
Or see this region's nucleotide sequence