Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05820

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM
1,220,628	+				-2.3
1,220,638	+				-0.1
1,220,638	+				-0.0
1,220,656	+				-0.9
1,220,656	+				+0.6
1,220,664	-				-1.4
1,220,672	+				-1.9
1,220,672	+				-0.6
1,220,672	+				+0.2
1,220,677	+				+0.5
1,220,677	+				+0.2
1,220,734	-				-0.5
1,220,774	+				-0.1
1,220,783	+				-0.1
1,220,791	-				+0.4
1,220,796	+				+2.1
1,220,806	+				+0.4
1,220,814	-				+1.0
1,220,818	+				-0.4
1,220,818	+				-0.9
1,220,819	+				-0.3
1,220,819	+				+0.4
1,220,819	+				+0.1
1,220,819	+				+0.2
1,220,829	+				-1.2
1,220,829	+				-1.0
1,220,829	+				+0.7
1,220,829	+				-1.1
1,220,829	+				-0.5
1,220,829	+				+0.2
1,220,829	+				-0.7
1,220,829	+				+0.3
1,220,830	+				-0.3
1,220,830	+				-0.5
1,220,830	+				+0.2
1,220,831	+				-0.1
1,220,837	-				-0.1
1,220,837	-				-1.3
1,220,837	-				-1.5
1,220,837	-				-0.1
1,220,837	-				-0.7
1,220,838	-				+0.3
1,220,838	-				-0.2
1,220,838	-				+0.2
1,220,838	-				+1.2
1,220,838	-				-1.4
1,220,839	-				+0.5
1,220,839	-				-0.3
1,220,841	+				-1.4
1,220,841	+				-0.1
1,220,855	+				-0.4
1,220,855	+				-1.8
1,220,856	+				+0.0
1,220,856	+				+0.1
1,220,856	+				-0.3
1,220,856	+				-2.8
1,220,863	-				-0.2
1,220,863	-				-0.6
1,220,864	-				-0.4
1,220,865	+				-0.6
1,220,865	+				+0.6
1,220,865	+				-0.7
1,220,865	+				+0.2
1,220,865	+				-0.4
1,220,867	+				+0.2
1,220,869	+				-0.5
1,220,871	-				+0.1
1,220,873	-				+0.2
1,220,873	-				-0.2
1,220,873	-				-1.2
1,220,873	-				+0.3
1,220,875	+				-0.9
1,220,875	-				+0.5
1,220,875	-				-1.0
1,220,875	-				-0.4
1,220,875	-				+0.9
1,220,875	-				-0.2
1,220,883	-				+0.7
1,220,930	+				-0.3
1,220,930	+				+0.4
1,220,935	+				-0.4
1,220,938	-				-0.5
1,220,938	-				-0.8
1,220,938	-				-0.5
1,220,941	-				-0.5
1,220,964	+		BWI76_RS05815	0.11	-0.6
1,220,966	+		BWI76_RS05815	0.12	-2.6
1,220,974	-		BWI76_RS05815	0.13	-0.2
1,220,976	+		BWI76_RS05815	0.13	+0.1
1,220,976	+		BWI76_RS05815	0.13	-0.1
1,220,976	+		BWI76_RS05815	0.13	-1.1
1,220,984	-		BWI76_RS05815	0.15	-0.3
1,220,991	+		BWI76_RS05815	0.16	-1.5
1,221,021	+		BWI76_RS05815	0.20	-0.2
1,221,023	+		BWI76_RS05815	0.20	+0.1
1,221,028	+		BWI76_RS05815	0.21	-2.6
1,221,028	+		BWI76_RS05815	0.21	-0.4
1,221,028	+		BWI76_RS05815	0.21	-0.1
1,221,028	+		BWI76_RS05815	0.21	-0.3
1,221,028	+		BWI76_RS05815	0.21	-0.6
1,221,029	-		BWI76_RS05815	0.21	-0.8
1,221,029	-		BWI76_RS05815	0.21	-0.4
1,221,029	-		BWI76_RS05815	0.21	+1.0
1,221,033	+		BWI76_RS05815	0.22	-0.4
1,221,033	+		BWI76_RS05815	0.22	+0.5
1,221,033	+		BWI76_RS05815	0.22	+0.2
1,221,033	+		BWI76_RS05815	0.22	-2.6
1,221,033	+		BWI76_RS05815	0.22	+0.7
1,221,033	+		BWI76_RS05815	0.22	-0.2
1,221,033	+		BWI76_RS05815	0.22	-0.1
1,221,033	+		BWI76_RS05815	0.22	+0.8
1,221,036	-		BWI76_RS05815	0.22	+0.4
1,221,036	-		BWI76_RS05815	0.22	-0.7
1,221,041	-		BWI76_RS05815	0.23	-0.0
1,221,041	-		BWI76_RS05815	0.23	-0.1
1,221,041	-		BWI76_RS05815	0.23	+1.1
1,221,041	-		BWI76_RS05815	0.23	-0.2
1,221,046	+		BWI76_RS05815	0.24	+1.7
1,221,078	+		BWI76_RS05815	0.29	-1.2
1,221,078	+		BWI76_RS05815	0.29	+1.0
1,221,078	+		BWI76_RS05815	0.29	+0.8
1,221,078	+		BWI76_RS05815	0.29	+0.2
1,221,078	+		BWI76_RS05815	0.29	-1.1
1,221,078	+		BWI76_RS05815	0.29	-1.9
1,221,078	+		BWI76_RS05815	0.29	+0.1
1,221,078	+		BWI76_RS05815	0.29	+0.1
1,221,078	+		BWI76_RS05815	0.29	-0.6
1,221,078	+		BWI76_RS05815	0.29	+0.3
1,221,086	-		BWI76_RS05815	0.30	+0.5
1,221,087	-		BWI76_RS05815	0.30	+0.9
1,221,098	+		BWI76_RS05815	0.32	-0.9
1,221,098	-		BWI76_RS05815	0.32	+0.0
1,221,106	-		BWI76_RS05815	0.33	-1.2
1,221,156	-		BWI76_RS05815	0.41	+0.9
1,221,414	-		BWI76_RS05815	0.80	-0.1
1,221,479	+				+0.1
1,221,487	-				+0.5
1,221,518	+				-0.6
1,221,518	+				-0.7
1,221,540	+				-1.3
1,221,649	+				+0.6
1,221,657	-				-0.3
1,221,681	-				+0.3
1,221,681	-				+0.3
1,221,681	-				-1.1
1,221,688	-				-1.5
1,221,693	-				-0.3
1,221,699	+				-0.4
1,221,807	+		BWI76_RS05820	0.13	+0.6
1,221,815	-		BWI76_RS05820	0.13	+1.4
1,221,815	-		BWI76_RS05820	0.13	-0.7
1,221,822	+		BWI76_RS05820	0.13	+0.2
1,221,841	-		BWI76_RS05820	0.14	-2.8
1,221,852	-		BWI76_RS05820	0.15	+0.2
1,221,917	+		BWI76_RS05820	0.18	+1.0
1,221,993	+		BWI76_RS05820	0.21	-1.6
1,222,237	+		BWI76_RS05820	0.33	+0.9
1,222,237	+		BWI76_RS05820	0.33	-1.5
1,222,237	+		BWI76_RS05820	0.33	-1.4
1,222,237	+		BWI76_RS05820	0.33	-0.5
1,222,245	-		BWI76_RS05820	0.33	+0.5
1,222,245	-		BWI76_RS05820	0.33	-0.2
1,222,248	+		BWI76_RS05820	0.34	+0.5
1,222,248	+		BWI76_RS05820	0.34	+2.5
1,222,248	+		BWI76_RS05820	0.34	+2.2
1,222,248	+		BWI76_RS05820	0.34	-0.2
1,222,256	-		BWI76_RS05820	0.34	-1.2
1,222,256	-				+0.4
1,222,270	+		BWI76_RS05820	0.35	-0.6
1,222,272	+		BWI76_RS05820	0.35	-3.3
1,222,272	+		BWI76_RS05820	0.35	-3.5
1,222,278	-		BWI76_RS05820	0.35	+0.4
1,222,280	-		BWI76_RS05820	0.35	-2.0
1,222,384	+				+2.3
1,222,397	+		BWI76_RS05820	0.41	-0.5
1,222,397	+		BWI76_RS05820	0.41	-0.2
1,222,397	+		BWI76_RS05820	0.41	-0.6
1,222,397	+		BWI76_RS05820	0.41	-0.5
1,222,402	+		BWI76_RS05820	0.41	+1.1
1,222,405	-		BWI76_RS05820	0.41	-0.8
1,222,405	-		BWI76_RS05820	0.41	+0.6
1,222,405	-				+2.1
1,222,405	-		BWI76_RS05820	0.41	+0.6
1,222,407	+		BWI76_RS05820	0.41	-0.1
1,222,408	-		BWI76_RS05820	0.41	+0.1
1,222,430	+		BWI76_RS05820	0.42	-0.1
1,222,438	-		BWI76_RS05820	0.43	-0.9
1,222,438	-		BWI76_RS05820	0.43	+2.1
1,222,449	-		BWI76_RS05820	0.43	-0.8
1,222,455	-		BWI76_RS05820	0.43	-2.3
1,222,486	+		BWI76_RS05820	0.45	-0.5
1,222,494	-				+3.3
1,222,494	-		BWI76_RS05820	0.45	+0.5
1,222,507	+		BWI76_RS05820	0.46	+0.4
1,222,509	+		BWI76_RS05820	0.46	+1.3
1,222,515	-		BWI76_RS05820	0.46	-0.3
1,222,517	-		BWI76_RS05820	0.46	+1.1
1,222,517	-		BWI76_RS05820	0.46	-2.9
1,222,517	-				-0.8
1,222,517	-		BWI76_RS05820	0.46	+1.2
1,222,755	-		BWI76_RS05820	0.58	-0.3
1,222,755	-				-0.1
1,222,792	+		BWI76_RS05820	0.60	-0.0
1,222,800	-		BWI76_RS05820	0.60	+1.1
1,222,800	-		BWI76_RS05820	0.60	-0.6
1,222,800	-		BWI76_RS05820	0.60	-1.7
1,222,800	-		BWI76_RS05820	0.60	+1.1
1,222,800	-		BWI76_RS05820	0.60	-0.9
1,222,800	-		BWI76_RS05820	0.60	+0.7
1,222,800	-		BWI76_RS05820	0.60	-0.6
1,223,122	+		BWI76_RS05820	0.75	-0.4
1,223,212	-		BWI76_RS05820	0.80	-0.0
1,223,359	-		BWI76_RS05820	0.87	-1.5
1,223,359	-		BWI76_RS05820	0.87	+1.2
1,223,430	-		BWI76_RS05820	0.90	-1.1
1,223,475	-				-1.1
1,223,480	-				-0.2
1,223,488	-				+0.0
1,223,501	-				-3.6
1,223,529	-				+0.9
1,223,529	-				-1.0
1,223,553	-				-0.7
1,223,648	-				-0.9
1,223,807	-		BWI76_RS05825	0.14	+2.0
1,223,822	+		BWI76_RS05825	0.16	+1.2
1,223,823	+		BWI76_RS05825	0.16	-0.5
1,223,823	+		BWI76_RS05825	0.16	+0.7
1,223,830	-		BWI76_RS05825	0.16	-0.8
1,223,830	-		BWI76_RS05825	0.16	+0.2
1,223,837	-		BWI76_RS05825	0.17	+0.3
1,223,837	-		BWI76_RS05825	0.17	+0.1
1,223,876	+		BWI76_RS05825	0.20	-3.0
1,223,876	+		BWI76_RS05825	0.20	-2.7
1,223,876	+		BWI76_RS05825	0.20	+0.0
1,223,884	-		BWI76_RS05825	0.21	+0.5
1,223,884	-		BWI76_RS05825	0.21	-0.9
1,223,884	-		BWI76_RS05825	0.21	+0.6
1,223,884	-		BWI76_RS05825	0.21	+0.1
1,223,884	-		BWI76_RS05825	0.21	+0.2
1,223,884	-		BWI76_RS05825	0.21	+1.2
1,223,884	-		BWI76_RS05825	0.21	+0.4
1,223,884	-		BWI76_RS05825	0.21	-0.1
1,223,884	-		BWI76_RS05825	0.21	-0.2
1,223,893	+		BWI76_RS05825	0.22	-1.8
1,223,893	+		BWI76_RS05825	0.22	-0.8
1,223,901	-		BWI76_RS05825	0.22	-0.7
1,223,901	-		BWI76_RS05825	0.22	+0.7
1,223,904	+		BWI76_RS05825	0.23	-0.4
1,223,904	+		BWI76_RS05825	0.23	-0.6
1,223,907	-		BWI76_RS05825	0.23	+0.7
1,223,907	-		BWI76_RS05825	0.23	-2.5
1,223,907	-		BWI76_RS05825	0.23	-0.1
1,223,911	-		BWI76_RS05825	0.23	-0.6
1,223,913	+		BWI76_RS05825	0.23	-2.6
1,223,939	+		BWI76_RS05825	0.25	-1.1
1,223,945	-		BWI76_RS05825	0.26	+0.1
1,223,955	-		BWI76_RS05825	0.27	-0.8
1,223,973	+		BWI76_RS05825	0.28	+0.8
1,223,994	-		BWI76_RS05825	0.30	+0.8
1,224,002	+		BWI76_RS05825	0.31	+0.6
1,224,010	-		BWI76_RS05825	0.31	+0.5
1,224,010	-		BWI76_RS05825	0.31	-0.8
1,224,010	-		BWI76_RS05825	0.31	+0.9
1,224,010	-		BWI76_RS05825	0.31	+0.4
1,224,010	-		BWI76_RS05825	0.31	+0.2
1,224,010	-		BWI76_RS05825	0.31	+0.2
1,224,010	-		BWI76_RS05825	0.31	-0.4
1,224,010	-		BWI76_RS05825	0.31	-0.3
1,224,010	-		BWI76_RS05825	0.31	+0.3
1,224,010	-		BWI76_RS05825	0.31	+0.3
1,224,057	-		BWI76_RS05825	0.35	-0.1
1,224,057	-		BWI76_RS05825	0.35	+0.4
1,224,057	-		BWI76_RS05825	0.35	+0.2
1,224,057	-		BWI76_RS05825	0.35	-2.8
1,224,072	+		BWI76_RS05825	0.37	-1.2
1,224,072	+		BWI76_RS05825	0.37	-0.5
1,224,080	-		BWI76_RS05825	0.37	-1.6
1,224,080	-				+2.3
1,224,106	+		BWI76_RS05825	0.40	-1.6
1,224,132	+		BWI76_RS05825	0.42	-0.2
1,224,133	+		BWI76_RS05825	0.42	-2.5
1,224,140	-		BWI76_RS05825	0.42	-0.1
1,224,154	+		BWI76_RS05825	0.44	-1.1
1,224,154	+		BWI76_RS05825	0.44	-1.0
1,224,160	-		BWI76_RS05825	0.44	+1.5
1,224,162	+		BWI76_RS05825	0.44	+0.5
1,224,162	-		BWI76_RS05825	0.44	+0.2
1,224,162	-		BWI76_RS05825	0.44	+0.3
1,224,162	-		BWI76_RS05825	0.44	+1.0
1,224,162	-		BWI76_RS05825	0.44	+0.0
1,224,170	-				+0.4
1,224,170	-		BWI76_RS05825	0.45	-0.1
1,224,182	-		BWI76_RS05825	0.46	-0.2
1,224,224	+		BWI76_RS05825	0.50	+0.2
1,224,249	-		BWI76_RS05825	0.52	-0.1
1,224,302	+		BWI76_RS05825	0.56	+0.0
1,224,302	+		BWI76_RS05825	0.56	-2.6
1,224,310	-		BWI76_RS05825	0.57	-0.7
1,224,310	-		BWI76_RS05825	0.57	+1.2
1,224,310	-		BWI76_RS05825	0.57	+0.6
1,224,310	-		BWI76_RS05825	0.57	-0.1
1,224,315	-		BWI76_RS05825	0.57	-0.6
1,224,323	-		BWI76_RS05825	0.58	-0.5
1,224,370	+		BWI76_RS05825	0.62	-1.4
1,224,378	-		BWI76_RS05825	0.63	+1.6
1,224,378	-		BWI76_RS05825	0.63	-0.6
1,224,508	+		BWI76_RS05825	0.74	+0.2