Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03730

Experiment: D-Glucose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03725 and BPHYT_RS03730 are separated by 6 nucleotidesBPHYT_RS03730 and BPHYT_RS03735 are separated by 198 nucleotidesBPHYT_RS03735 and BPHYT_RS03740 overlap by 4 nucleotides BPHYT_RS03725: BPHYT_RS03725 - serine hydroxymethyltransferase, at 845,269 to 846,516 _RS03725 BPHYT_RS03730: BPHYT_RS03730 - transcriptional repressor NrdR, at 846,523 to 847,005 _RS03730 BPHYT_RS03735: BPHYT_RS03735 - pilus assembly protein, at 847,204 to 847,770 _RS03735 BPHYT_RS03740: BPHYT_RS03740 - hypothetical protein, at 847,767 to 848,213 _RS03740 Position (kb) 846 847 848Strain fitness (log2 ratio) -2 -1 0 1 2 3at 845.857 kb on + strand, within BPHYT_RS03725at 846.644 kb on - strand, within BPHYT_RS03730at 846.800 kb on - strand, within BPHYT_RS03730at 846.893 kb on - strand, within BPHYT_RS03730at 847.385 kb on - strandat 847.385 kb on - strand, within BPHYT_RS03735at 847.385 kb on - strand, within BPHYT_RS03735at 847.579 kb on - strand, within BPHYT_RS03735at 847.635 kb on + strand, within BPHYT_RS03735at 847.776 kb on + strandat 847.776 kb on + strandat 847.777 kb on - strandat 847.792 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 20 mM (C)
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845,857 + BPHYT_RS03725 0.47 -2.5
846,644 - BPHYT_RS03730 0.25 -1.6
846,800 - BPHYT_RS03730 0.57 -1.4
846,893 - BPHYT_RS03730 0.77 -0.6
847,385 - +3.6
847,385 - BPHYT_RS03735 0.32 +0.0
847,385 - BPHYT_RS03735 0.32 -0.1
847,579 - BPHYT_RS03735 0.66 +0.9
847,635 + BPHYT_RS03735 0.76 -0.7
847,776 + +0.2
847,776 + -0.3
847,777 - -0.4
847,792 - +0.3

Or see this region's nucleotide sequence