Experiment: Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004744 and ABIE53_004745 are separated by 197 nucleotides ABIE53_004745 and ABIE53_004746 are separated by 243 nucleotides
ABIE53_004744: ABIE53_004744 - methyl-accepting chemotaxis protein, at 940,411 to 942,384
_004744
ABIE53_004745: ABIE53_004745 - Cu+-exporting ATPase, at 942,582 to 944,936
_004745
ABIE53_004746: ABIE53_004746 - hypothetical protein, at 945,180 to 946,685
_004746
Position (kb) 942
943
944
945 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 941.591 kb on + strand, within ABIE53_004744 at 941.592 kb on - strand, within ABIE53_004744 at 941.687 kb on + strand, within ABIE53_004744 at 941.687 kb on + strand, within ABIE53_004744 at 941.687 kb on + strand, within ABIE53_004744 at 941.687 kb on + strand, within ABIE53_004744 at 941.687 kb on + strand, within ABIE53_004744 at 941.687 kb on + strand, within ABIE53_004744 at 941.688 kb on - strand, within ABIE53_004744 at 941.688 kb on - strand, within ABIE53_004744 at 941.688 kb on - strand, within ABIE53_004744 at 941.688 kb on - strand, within ABIE53_004744 at 941.688 kb on - strand, within ABIE53_004744 at 941.688 kb on - strand, within ABIE53_004744 at 941.688 kb on - strand, within ABIE53_004744 at 941.814 kb on - strand, within ABIE53_004744 at 941.857 kb on - strand, within ABIE53_004744 at 941.858 kb on + strand, within ABIE53_004744 at 941.858 kb on + strand, within ABIE53_004744 at 941.858 kb on + strand, within ABIE53_004744 at 941.858 kb on + strand, within ABIE53_004744 at 941.858 kb on + strand, within ABIE53_004744 at 941.858 kb on + strand, within ABIE53_004744 at 941.858 kb on + strand, within ABIE53_004744 at 941.858 kb on + strand, within ABIE53_004744 at 941.858 kb on + strand, within ABIE53_004744 at 941.859 kb on - strand, within ABIE53_004744 at 941.859 kb on - strand, within ABIE53_004744 at 941.859 kb on - strand, within ABIE53_004744 at 941.859 kb on - strand, within ABIE53_004744 at 941.859 kb on - strand, within ABIE53_004744 at 941.859 kb on - strand, within ABIE53_004744 at 941.859 kb on - strand, within ABIE53_004744 at 941.859 kb on - strand, within ABIE53_004744 at 941.859 kb on - strand, within ABIE53_004744 at 941.885 kb on + strand, within ABIE53_004744 at 941.886 kb on - strand, within ABIE53_004744 at 941.886 kb on - strand, within ABIE53_004744 at 941.886 kb on - strand, within ABIE53_004744 at 942.033 kb on + strand, within ABIE53_004744 at 942.052 kb on + strand, within ABIE53_004744 at 942.052 kb on + strand, within ABIE53_004744 at 942.052 kb on + strand, within ABIE53_004744 at 942.052 kb on + strand, within ABIE53_004744 at 942.052 kb on + strand, within ABIE53_004744 at 942.053 kb on - strand, within ABIE53_004744 at 942.053 kb on - strand, within ABIE53_004744 at 942.053 kb on - strand, within ABIE53_004744 at 942.053 kb on - strand, within ABIE53_004744 at 942.123 kb on + strand, within ABIE53_004744 at 942.123 kb on + strand, within ABIE53_004744 at 942.123 kb on + strand, within ABIE53_004744 at 942.123 kb on + strand, within ABIE53_004744 at 942.123 kb on + strand, within ABIE53_004744 at 942.124 kb on - strand, within ABIE53_004744 at 942.124 kb on - strand, within ABIE53_004744 at 942.125 kb on + strand, within ABIE53_004744 at 942.125 kb on + strand, within ABIE53_004744 at 942.125 kb on + strand, within ABIE53_004744 at 942.125 kb on + strand, within ABIE53_004744 at 942.125 kb on + strand, within ABIE53_004744 at 942.125 kb on + strand, within ABIE53_004744 at 942.125 kb on + strand, within ABIE53_004744 at 942.125 kb on + strand, within ABIE53_004744 at 942.125 kb on + strand, within ABIE53_004744 at 942.125 kb on + strand, within ABIE53_004744 at 942.125 kb on + strand, within ABIE53_004744 at 942.125 kb on + strand, within ABIE53_004744 at 942.125 kb on + strand, within ABIE53_004744 at 942.125 kb on + strand, within ABIE53_004744 at 942.126 kb on - strand, within ABIE53_004744 at 942.126 kb on - strand, within ABIE53_004744 at 942.126 kb on - strand, within ABIE53_004744 at 942.126 kb on - strand, within ABIE53_004744 at 942.126 kb on - strand, within ABIE53_004744 at 942.126 kb on - strand, within ABIE53_004744 at 942.126 kb on - strand, within ABIE53_004744 at 942.126 kb on - strand, within ABIE53_004744 at 942.126 kb on - strand, within ABIE53_004744 at 942.126 kb on - strand, within ABIE53_004744 at 942.126 kb on - strand, within ABIE53_004744 at 942.126 kb on - strand, within ABIE53_004744 at 942.126 kb on - strand, within ABIE53_004744 at 942.126 kb on - strand, within ABIE53_004744 at 942.126 kb on - strand, within ABIE53_004744 at 942.126 kb on - strand, within ABIE53_004744 at 942.334 kb on + strand at 942.334 kb on + strand at 942.335 kb on - strand at 942.399 kb on + strand at 942.399 kb on + strand at 942.399 kb on + strand at 942.399 kb on + strand at 942.400 kb on - strand at 942.400 kb on - strand at 942.400 kb on - strand at 942.400 kb on - strand at 942.400 kb on - strand at 942.400 kb on - strand at 942.400 kb on - strand at 942.504 kb on - strand at 942.506 kb on + strand at 942.506 kb on + strand at 942.506 kb on + strand at 942.507 kb on - strand at 942.564 kb on + strand at 942.715 kb on + strand at 942.715 kb on + strand at 942.715 kb on + strand at 942.716 kb on - strand at 942.716 kb on - strand at 942.716 kb on - strand at 942.716 kb on - strand at 942.716 kb on - strand at 942.716 kb on - strand at 942.716 kb on - strand at 942.716 kb on - strand at 943.190 kb on + strand, within ABIE53_004745 at 943.191 kb on - strand, within ABIE53_004745 at 943.191 kb on - strand, within ABIE53_004745 at 943.191 kb on - strand, within ABIE53_004745 at 943.191 kb on - strand, within ABIE53_004745 at 943.381 kb on + strand, within ABIE53_004745 at 943.381 kb on + strand, within ABIE53_004745 at 943.382 kb on - strand, within ABIE53_004745 at 943.382 kb on - strand, within ABIE53_004745 at 943.382 kb on - strand, within ABIE53_004745 at 943.382 kb on - strand, within ABIE53_004745 at 943.382 kb on - strand, within ABIE53_004745 at 943.774 kb on - strand, within ABIE53_004745 at 944.236 kb on + strand, within ABIE53_004745 at 944.236 kb on + strand, within ABIE53_004745 at 944.236 kb on + strand, within ABIE53_004745 at 944.236 kb on + strand, within ABIE53_004745 at 944.237 kb on - strand, within ABIE53_004745 at 944.237 kb on - strand, within ABIE53_004745 at 944.237 kb on - strand, within ABIE53_004745 at 944.237 kb on - strand, within ABIE53_004745 at 944.237 kb on - strand, within ABIE53_004745 at 944.276 kb on - strand, within ABIE53_004745 at 944.276 kb on - strand, within ABIE53_004745 at 944.290 kb on + strand, within ABIE53_004745 at 944.291 kb on - strand, within ABIE53_004745 at 944.357 kb on - strand, within ABIE53_004745 at 944.368 kb on + strand, within ABIE53_004745 at 944.368 kb on + strand, within ABIE53_004745 at 944.369 kb on - strand, within ABIE53_004745 at 944.369 kb on - strand, within ABIE53_004745 at 944.369 kb on - strand, within ABIE53_004745 at 944.946 kb on + strand at 944.946 kb on + strand at 944.946 kb on + strand at 944.946 kb on + strand at 944.946 kb on + strand at 944.946 kb on + strand at 944.947 kb on - strand at 944.947 kb on - strand at 944.947 kb on - strand at 944.947 kb on - strand at 944.947 kb on - strand at 944.947 kb on - strand at 944.947 kb on - strand at 944.949 kb on + strand at 944.949 kb on + strand at 944.949 kb on + strand at 945.057 kb on + strand at 945.057 kb on + strand at 945.057 kb on + strand at 945.057 kb on + strand at 945.057 kb on + strand at 945.057 kb on + strand at 945.058 kb on - strand at 945.058 kb on - strand at 945.058 kb on - strand at 945.058 kb on - strand at 945.058 kb on - strand at 945.058 kb on - strand at 945.185 kb on - strand at 945.185 kb on - strand at 945.207 kb on - strand at 945.213 kb on + strand at 945.213 kb on + strand at 945.213 kb on + strand at 945.214 kb on - strand at 945.214 kb on - strand at 945.214 kb on - strand at 945.214 kb on - strand at 945.324 kb on + strand at 945.324 kb on + strand at 945.324 kb on + strand at 945.324 kb on + strand at 945.324 kb on + strand at 945.325 kb on - strand at 945.325 kb on - strand at 945.325 kb on - strand at 945.325 kb on - strand at 945.325 kb on - strand at 945.325 kb on - strand at 945.328 kb on + strand at 945.328 kb on + strand at 945.328 kb on + strand at 945.328 kb on + strand at 945.328 kb on + strand at 945.328 kb on + strand at 945.328 kb on + strand at 945.328 kb on + strand at 945.328 kb on + strand at 945.328 kb on + strand at 945.328 kb on + strand at 945.328 kb on + strand at 945.328 kb on + strand at 945.328 kb on + strand at 945.329 kb on - strand at 945.329 kb on - strand at 945.329 kb on - strand at 945.329 kb on - strand at 945.329 kb on - strand at 945.329 kb on - strand at 945.329 kb on - strand at 945.329 kb on - strand at 945.329 kb on - strand at 945.329 kb on - strand at 945.329 kb on - strand at 945.407 kb on + strand, within ABIE53_004746 at 945.407 kb on + strand, within ABIE53_004746 at 945.407 kb on + strand, within ABIE53_004746 at 945.407 kb on + strand, within ABIE53_004746 at 945.408 kb on - strand, within ABIE53_004746 at 945.408 kb on - strand, within ABIE53_004746 at 945.408 kb on - strand, within ABIE53_004746 at 945.408 kb on - strand, within ABIE53_004746 at 945.549 kb on + strand, within ABIE53_004746 at 945.550 kb on - strand, within ABIE53_004746 at 945.550 kb on - strand, within ABIE53_004746 at 945.572 kb on + strand, within ABIE53_004746 at 945.572 kb on + strand, within ABIE53_004746 at 945.572 kb on + strand, within ABIE53_004746 at 945.572 kb on + strand, within ABIE53_004746 at 945.572 kb on + strand, within ABIE53_004746 at 945.573 kb on - strand, within ABIE53_004746 at 945.573 kb on - strand, within ABIE53_004746 at 945.573 kb on - strand, within ABIE53_004746 at 945.573 kb on - strand, within ABIE53_004746 at 945.573 kb on - strand, within ABIE53_004746 at 945.817 kb on - strand, within ABIE53_004746 at 945.861 kb on - strand, within ABIE53_004746
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days remove 941,591 + ABIE53_004744 0.60 -2.0 941,592 - ABIE53_004744 0.60 -1.1 941,687 + ABIE53_004744 0.65 -2.5 941,687 + ABIE53_004744 0.65 -1.0 941,687 + ABIE53_004744 0.65 +1.9 941,687 + ABIE53_004744 0.65 -0.8 941,687 + ABIE53_004744 0.65 +2.5 941,687 + ABIE53_004744 0.65 +0.5 941,688 - ABIE53_004744 0.65 -2.0 941,688 - ABIE53_004744 0.65 -0.5 941,688 - ABIE53_004744 0.65 -2.5 941,688 - ABIE53_004744 0.65 -0.7 941,688 - ABIE53_004744 0.65 -0.1 941,688 - ABIE53_004744 0.65 +0.6 941,688 - ABIE53_004744 0.65 +0.1 941,814 - ABIE53_004744 0.71 -0.3 941,857 - ABIE53_004744 0.73 -0.3 941,858 + ABIE53_004744 0.73 -0.4 941,858 + ABIE53_004744 0.73 -0.1 941,858 + ABIE53_004744 0.73 +0.5 941,858 + ABIE53_004744 0.73 +0.9 941,858 + ABIE53_004744 0.73 -1.0 941,858 + ABIE53_004744 0.73 -1.4 941,858 + ABIE53_004744 0.73 -1.3 941,858 + ABIE53_004744 0.73 -2.9 941,858 + ABIE53_004744 0.73 +2.5 941,859 - ABIE53_004744 0.73 +0.9 941,859 - ABIE53_004744 0.73 -1.1 941,859 - ABIE53_004744 0.73 -0.3 941,859 - ABIE53_004744 0.73 -1.0 941,859 - ABIE53_004744 0.73 +1.4 941,859 - ABIE53_004744 0.73 -1.0 941,859 - ABIE53_004744 0.73 +0.1 941,859 - ABIE53_004744 0.73 +2.1 941,859 - ABIE53_004744 0.73 -1.5 941,885 + ABIE53_004744 0.75 +1.5 941,886 - ABIE53_004744 0.75 +0.7 941,886 - ABIE53_004744 0.75 +0.9 941,886 - ABIE53_004744 0.75 -1.0 942,033 + ABIE53_004744 0.82 +1.5 942,052 + ABIE53_004744 0.83 +0.9 942,052 + ABIE53_004744 0.83 +0.5 942,052 + ABIE53_004744 0.83 +0.3 942,052 + ABIE53_004744 0.83 -0.1 942,052 + ABIE53_004744 0.83 +0.9 942,053 - ABIE53_004744 0.83 -1.6 942,053 - ABIE53_004744 0.83 -0.6 942,053 - ABIE53_004744 0.83 -2.1 942,053 - ABIE53_004744 0.83 +0.1 942,123 + ABIE53_004744 0.87 -0.6 942,123 + ABIE53_004744 0.87 -0.5 942,123 + ABIE53_004744 0.87 +1.1 942,123 + ABIE53_004744 0.87 +0.9 942,123 + ABIE53_004744 0.87 -0.3 942,124 - ABIE53_004744 0.87 -1.1 942,124 - ABIE53_004744 0.87 -1.9 942,125 + ABIE53_004744 0.87 -1.1 942,125 + ABIE53_004744 0.87 -0.3 942,125 + ABIE53_004744 0.87 +1.5 942,125 + ABIE53_004744 0.87 -0.7 942,125 + ABIE53_004744 0.87 +3.3 942,125 + ABIE53_004744 0.87 -1.6 942,125 + ABIE53_004744 0.87 +1.0 942,125 + ABIE53_004744 0.87 -0.5 942,125 + ABIE53_004744 0.87 -1.5 942,125 + ABIE53_004744 0.87 +0.5 942,125 + ABIE53_004744 0.87 +1.5 942,125 + ABIE53_004744 0.87 +0.4 942,125 + ABIE53_004744 0.87 -0.1 942,125 + ABIE53_004744 0.87 +0.9 942,126 - ABIE53_004744 0.87 -1.5 942,126 - ABIE53_004744 0.87 +0.1 942,126 - ABIE53_004744 0.87 +0.7 942,126 - ABIE53_004744 0.87 -0.1 942,126 - ABIE53_004744 0.87 -0.6 942,126 - ABIE53_004744 0.87 +2.5 942,126 - ABIE53_004744 0.87 +0.7 942,126 - ABIE53_004744 0.87 +0.9 942,126 - ABIE53_004744 0.87 +1.9 942,126 - ABIE53_004744 0.87 -0.5 942,126 - ABIE53_004744 0.87 -2.8 942,126 - ABIE53_004744 0.87 +0.1 942,126 - ABIE53_004744 0.87 -0.2 942,126 - ABIE53_004744 0.87 -0.2 942,126 - ABIE53_004744 0.87 +0.5 942,126 - ABIE53_004744 0.87 +0.4 942,334 + -1.1 942,334 + -1.7 942,335 - -0.1 942,399 + +1.0 942,399 + +0.1 942,399 + -0.7 942,399 + -1.8 942,400 - -0.7 942,400 - -0.3 942,400 - -0.5 942,400 - +2.5 942,400 - +1.0 942,400 - -0.9 942,400 - -2.1 942,504 - -1.5 942,506 + -0.9 942,506 + +0.9 942,506 + +1.5 942,507 - -0.5 942,564 + -0.7 942,715 + +0.9 942,715 + -1.8 942,715 + -2.6 942,716 - +0.5 942,716 - -1.8 942,716 - -1.6 942,716 - +1.3 942,716 - +1.6 942,716 - -0.3 942,716 - -0.6 942,716 - +1.8 943,190 + ABIE53_004745 0.26 -2.1 943,191 - ABIE53_004745 0.26 +0.3 943,191 - ABIE53_004745 0.26 -1.6 943,191 - ABIE53_004745 0.26 +0.3 943,191 - ABIE53_004745 0.26 -1.4 943,381 + ABIE53_004745 0.34 -1.7 943,381 + ABIE53_004745 0.34 -0.5 943,382 - ABIE53_004745 0.34 -0.1 943,382 - ABIE53_004745 0.34 -2.2 943,382 - ABIE53_004745 0.34 -1.5 943,382 - ABIE53_004745 0.34 -1.9 943,382 - ABIE53_004745 0.34 -0.3 943,774 - ABIE53_004745 0.51 +0.1 944,236 + ABIE53_004745 0.70 +1.1 944,236 + ABIE53_004745 0.70 -1.3 944,236 + ABIE53_004745 0.70 +1.9 944,236 + ABIE53_004745 0.70 -1.4 944,237 - ABIE53_004745 0.70 -1.5 944,237 - ABIE53_004745 0.70 -2.1 944,237 - ABIE53_004745 0.70 -2.1 944,237 - ABIE53_004745 0.70 -2.6 944,237 - ABIE53_004745 0.70 -0.3 944,276 - ABIE53_004745 0.72 -0.1 944,276 - ABIE53_004745 0.72 -2.1 944,290 + ABIE53_004745 0.73 +0.9 944,291 - ABIE53_004745 0.73 -0.4 944,357 - ABIE53_004745 0.75 +0.6 944,368 + ABIE53_004745 0.76 -2.3 944,368 + ABIE53_004745 0.76 +1.0 944,369 - ABIE53_004745 0.76 -1.1 944,369 - ABIE53_004745 0.76 -1.5 944,369 - ABIE53_004745 0.76 +0.5 944,946 + +0.1 944,946 + +0.1 944,946 + -2.7 944,946 + +0.7 944,946 + -1.5 944,946 + +0.5 944,947 - +0.3 944,947 - +2.2 944,947 - -2.4 944,947 - -1.8 944,947 - -1.1 944,947 - -0.5 944,947 - +2.5 944,949 + +0.5 944,949 + +3.2 944,949 + +1.1 945,057 + +1.0 945,057 + -1.9 945,057 + +0.3 945,057 + -2.3 945,057 + -0.8 945,057 + -0.9 945,058 - -2.7 945,058 - +0.1 945,058 - -2.9 945,058 - -0.5 945,058 - -0.9 945,058 - +0.9 945,185 - -0.5 945,185 - -2.4 945,207 - +0.5 945,213 + -3.2 945,213 + -2.9 945,213 + -0.2 945,214 - -1.9 945,214 - -0.7 945,214 - -0.9 945,214 - -3.6 945,324 + +0.7 945,324 + -0.6 945,324 + -1.1 945,324 + +1.5 945,324 + +0.9 945,325 - -0.3 945,325 - -1.4 945,325 - -1.2 945,325 - +0.9 945,325 - +0.1 945,325 - -1.4 945,328 + -1.3 945,328 + +1.1 945,328 + -0.1 945,328 + +0.5 945,328 + +2.1 945,328 + +1.1 945,328 + -1.3 945,328 + -0.3 945,328 + -2.0 945,328 + -1.1 945,328 + +0.4 945,328 + -1.2 945,328 + -1.0 945,328 + -2.9 945,329 - -0.1 945,329 - -0.9 945,329 - -2.1 945,329 - -4.3 945,329 - -4.1 945,329 - -0.0 945,329 - -0.5 945,329 - -0.5 945,329 - +0.1 945,329 - +0.4 945,329 - -0.0 945,407 + ABIE53_004746 0.15 -2.2 945,407 + ABIE53_004746 0.15 -2.3 945,407 + ABIE53_004746 0.15 -0.5 945,407 + ABIE53_004746 0.15 -1.0 945,408 - ABIE53_004746 0.15 +0.5 945,408 - ABIE53_004746 0.15 -1.4 945,408 - ABIE53_004746 0.15 +0.5 945,408 - ABIE53_004746 0.15 +0.7 945,549 + ABIE53_004746 0.25 +2.8 945,550 - ABIE53_004746 0.25 -1.4 945,550 - ABIE53_004746 0.25 +0.1 945,572 + ABIE53_004746 0.26 -1.5 945,572 + ABIE53_004746 0.26 -1.9 945,572 + ABIE53_004746 0.26 -2.5 945,572 + ABIE53_004746 0.26 +0.1 945,572 + ABIE53_004746 0.26 +1.5 945,573 - ABIE53_004746 0.26 -0.3 945,573 - ABIE53_004746 0.26 +0.1 945,573 - ABIE53_004746 0.26 -0.1 945,573 - ABIE53_004746 0.26 +3.5 945,573 - ABIE53_004746 0.26 +1.9 945,817 - ABIE53_004746 0.42 -2.3 945,861 - ABIE53_004746 0.45 -1.7
Or see this region's nucleotide sequence