Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001440

Experiment: Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
1,609,803	+				+1.5
1,609,804	-				-0.5
1,609,804	-				+0.3
1,609,826	+				-0.8
1,609,826	+				-0.0
1,609,826	+				-0.9
1,609,826	+				-2.0
1,609,827	-				-0.7
1,609,827	-				+0.2
1,609,827	-				+0.0
1,609,827	-				+0.2
1,609,827	-				-2.7
1,609,877	+				-0.5
1,609,959	+		ABIE53_001439	0.15	-3.5
1,610,047	+		ABIE53_001439	0.24	+4.1
1,610,047	+		ABIE53_001439	0.24	-0.2
1,610,047	+		ABIE53_001439	0.24	-2.0
1,610,047	+		ABIE53_001439	0.24	+0.7
1,610,047	+		ABIE53_001439	0.24	-1.0
1,610,047	+		ABIE53_001439	0.24	+1.4
1,610,048	-		ABIE53_001439	0.24	+3.3
1,610,048	-		ABIE53_001439	0.24	-0.0
1,610,048	-		ABIE53_001439	0.24	-1.5
1,610,048	-		ABIE53_001439	0.24	+0.5
1,610,048	-		ABIE53_001439	0.24	-0.0
1,610,048	-		ABIE53_001439	0.24	+1.0
1,610,048	-		ABIE53_001439	0.24	+2.5
1,610,058	-		ABIE53_001439	0.26	-1.5
1,610,093	+		ABIE53_001439	0.29	-0.0
1,610,094	-		ABIE53_001439	0.30	-2.3
1,610,187	-		ABIE53_001439	0.40	-2.0
1,610,187	-		ABIE53_001439	0.40	-0.8
1,610,187	-		ABIE53_001439	0.40	+0.1
1,610,367	-		ABIE53_001439	0.60	-0.3
1,610,428	-		ABIE53_001439	0.67	-2.3
1,610,483	+		ABIE53_001439	0.73	+0.4
1,610,598	+		ABIE53_001439	0.86	+1.0
1,610,598	+		ABIE53_001439	0.86	-0.3
1,610,598	+		ABIE53_001439	0.86	-1.4
1,610,598	+		ABIE53_001439	0.86	+2.5
1,610,598	+		ABIE53_001439	0.86	-0.8
1,610,599	-		ABIE53_001439	0.86	-1.7
1,610,599	-		ABIE53_001439	0.86	-1.5
1,610,599	-		ABIE53_001439	0.86	-0.4
1,610,599	-		ABIE53_001439	0.86	-2.0
1,610,599	-		ABIE53_001439	0.86	+0.2
1,610,599	-		ABIE53_001439	0.86	+2.5
1,610,721	-				-0.5
1,610,803	+				+1.0
1,610,863	+				-2.3
1,610,863	+				-1.0
1,610,863	+				-0.5
1,610,863	+				+1.5
1,610,863	+				-2.5
1,610,863	+				+1.4
1,610,863	+				-0.8
1,610,863	+				-1.7
1,610,863	+				-0.6
1,610,863	+				-1.4
1,610,863	+				+0.0
1,610,863	+				-2.0
1,610,863	+				-0.3
1,610,863	+				-0.5
1,610,864	-				-0.8
1,610,864	-				-0.8
1,610,864	-				-3.1
1,610,864	-				+1.0
1,610,864	-				+1.3
1,610,864	-				-2.6
1,610,864	-				+2.3
1,610,864	-				-1.5
1,610,864	-				-0.1
1,610,864	-				-1.8
1,610,864	-				-3.0
1,610,864	-				+3.3
1,610,864	-				+1.0
1,610,864	-				-1.7
1,610,864	-				+0.8
1,610,864	-				+0.1
1,610,864	-				+0.1
1,610,864	-				+1.4
1,610,864	-				+2.5
1,610,864	-				+0.9
1,610,864	-				-0.6
1,610,864	-				-0.0
1,610,962	+		ABIE53_001440	0.16	+1.0
1,610,963	-		ABIE53_001440	0.16	-0.9
1,610,989	+		ABIE53_001440	0.18	+2.8
1,611,016	+		ABIE53_001440	0.21	+0.2
1,611,016	+		ABIE53_001440	0.21	+0.7
1,611,017	-		ABIE53_001440	0.21	-0.0
1,611,017	-		ABIE53_001440	0.21	-0.1
1,611,017	-		ABIE53_001440	0.21	-0.2
1,611,043	+		ABIE53_001440	0.23	-1.5
1,611,043	+		ABIE53_001440	0.23	+0.5
1,611,043	+		ABIE53_001440	0.23	-0.3
1,611,043	+		ABIE53_001440	0.23	-1.9
1,611,043	+		ABIE53_001440	0.23	+0.2
1,611,043	+		ABIE53_001440	0.23	-0.3
1,611,043	+		ABIE53_001440	0.23	-0.3
1,611,044	-		ABIE53_001440	0.24	-1.4
1,611,044	-		ABIE53_001440	0.24	+1.5
1,611,044	-		ABIE53_001440	0.24	-1.1
1,611,044	-		ABIE53_001440	0.24	-0.1
1,611,044	-		ABIE53_001440	0.24	+0.5
1,611,044	-		ABIE53_001440	0.24	-2.8
1,611,044	-		ABIE53_001440	0.24	-1.8
1,611,071	+		ABIE53_001440	0.26	+2.6
1,611,071	+		ABIE53_001440	0.26	-0.7
1,611,072	-		ABIE53_001440	0.26	+1.5
1,611,072	-		ABIE53_001440	0.26	-0.0
1,611,072	-		ABIE53_001440	0.26	+1.9
1,611,117	+		ABIE53_001440	0.31	-1.3
1,611,118	-		ABIE53_001440	0.31	+0.1
1,611,193	+		ABIE53_001440	0.38	-0.3
1,611,194	-		ABIE53_001440	0.38	-1.4
1,611,194	-		ABIE53_001440	0.38	-1.2
1,611,239	+		ABIE53_001440	0.42	-0.0
1,611,484	+		ABIE53_001440	0.66	-1.4
1,611,485	-		ABIE53_001440	0.66	-0.4
1,611,485	-		ABIE53_001440	0.66	+0.5
1,611,485	-		ABIE53_001440	0.66	-2.0
1,611,485	-		ABIE53_001440	0.66	+0.1
1,611,485	-		ABIE53_001440	0.66	-0.0
1,611,485	-		ABIE53_001440	0.66	-1.6
1,611,491	+		ABIE53_001440	0.67	+0.5
1,611,557	+		ABIE53_001440	0.73	-1.6
1,611,557	+		ABIE53_001440	0.73	+1.7
1,611,557	+		ABIE53_001440	0.73	-1.5
1,611,557	+		ABIE53_001440	0.73	-1.7
1,611,557	+		ABIE53_001440	0.73	+2.2
1,611,558	-		ABIE53_001440	0.73	+0.0
1,611,558	-		ABIE53_001440	0.73	+2.5
1,611,558	-		ABIE53_001440	0.73	+0.5
1,611,640	+		ABIE53_001440	0.81	+1.0
1,611,640	+		ABIE53_001440	0.81	+0.5
1,611,640	+		ABIE53_001440	0.81	-2.0
1,611,641	-		ABIE53_001440	0.82	-1.0
1,611,659	+		ABIE53_001440	0.83	-0.7
1,611,659	+		ABIE53_001440	0.83	-0.4
1,611,659	+		ABIE53_001440	0.83	-0.0
1,611,659	+		ABIE53_001440	0.83	+0.5
1,611,659	+		ABIE53_001440	0.83	-0.3
1,611,660	-		ABIE53_001440	0.83	-0.5
1,611,660	-		ABIE53_001440	0.83	-0.9
1,611,679	+		ABIE53_001440	0.85	-0.8
1,611,680	-		ABIE53_001440	0.85	-2.7
1,611,682	+		ABIE53_001440	0.86	-0.5
1,611,682	+		ABIE53_001440	0.86	-0.0
1,611,682	+		ABIE53_001440	0.86	-0.8
1,611,682	+		ABIE53_001440	0.86	-1.1
1,611,682	+		ABIE53_001440	0.86	+0.2
1,611,682	+		ABIE53_001440	0.86	+0.4
1,611,682	+		ABIE53_001440	0.86	+1.9
1,611,682	+		ABIE53_001440	0.86	+1.0
1,611,682	+		ABIE53_001440	0.86	-2.0
1,611,682	+		ABIE53_001440	0.86	-1.2
1,611,682	+		ABIE53_001440	0.86	+4.3
1,611,683	-		ABIE53_001440	0.86	+1.0
1,611,683	-		ABIE53_001440	0.86	+0.2
1,611,683	-		ABIE53_001440	0.86	-2.0
1,611,683	-		ABIE53_001440	0.86	-0.9
1,611,683	-		ABIE53_001440	0.86	-1.1
1,611,683	-		ABIE53_001440	0.86	-3.3
1,611,683	-		ABIE53_001440	0.86	+2.1
1,611,683	-		ABIE53_001440	0.86	-1.2
1,611,830	+				+1.0
1,611,830	+				-2.9
1,611,830	+				+1.4
1,611,830	+				-1.5
1,611,830	+				-1.6
1,611,830	+				-1.4
1,611,830	+				+0.2
1,611,830	+				-3.0
1,611,830	+				-2.2
1,611,831	-				+1.0
1,611,831	-				+1.0
1,611,831	-				+0.5
1,611,831	-				-1.2
1,611,831	-				-0.0
1,611,833	+				+0.2
1,611,833	+				+0.5
1,611,833	+				+0.2
1,611,833	+				-1.3
1,611,834	-				+0.2
1,611,834	-				-1.4
1,611,834	-				-1.1
1,611,834	-				+0.8
1,611,834	-				+1.5
1,611,834	-				-0.5
1,611,834	-				-2.2
1,611,834	-				-1.0
1,611,909	+				+0.5
1,611,909	+				-3.5
1,611,910	-				-0.3
1,611,919	+				-0.2
1,611,919	+				+3.4
1,611,919	+				+1.1
1,611,919	+				+0.8
1,611,919	+				+0.6
1,611,919	+				-0.6
1,611,919	+				-0.5
1,611,920	-				-0.2
1,611,920	-				-1.8
1,611,920	-				-1.4
1,611,920	-				-1.8
1,611,920	-				-1.6
1,611,920	-				+2.5
1,611,920	-				+0.2
1,612,064	+				+0.1
1,612,064	+				-0.1
1,612,064	+				-0.5
1,612,064	+				-0.0
1,612,065	-				+1.7
1,612,065	-				-1.3
1,612,065	-				-3.0
1,612,065	-				-1.4
1,612,065	-				+1.1