Experiment: Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000725 and ABIE53_000726 are separated by 61 nucleotides ABIE53_000726 and ABIE53_000727 are separated by 68 nucleotides ABIE53_000727 and ABIE53_000728 are separated by 95 nucleotides
ABIE53_000725: ABIE53_000725 - adenine phosphoribosyltransferase, at 779,215 to 779,781
_000725
ABIE53_000726: ABIE53_000726 - threonine/homoserine/homoserine lactone efflux protein, at 779,843 to 780,469
_000726
ABIE53_000727: ABIE53_000727 - 8-oxo-dGTP pyrophosphatase MutT (NUDIX family), at 780,538 to 781,389
_000727
ABIE53_000728: ABIE53_000728 - formyltetrahydrofolate deformylase, at 781,485 to 782,354
_000728
Position (kb) 780
781
782 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 779.752 kb on + strand at 779.752 kb on + strand at 779.752 kb on + strand at 779.753 kb on - strand at 779.754 kb on + strand at 779.754 kb on + strand at 779.754 kb on + strand at 779.755 kb on - strand at 779.831 kb on + strand at 779.831 kb on + strand at 779.832 kb on - strand at 779.832 kb on - strand at 779.835 kb on + strand at 779.835 kb on + strand at 779.835 kb on + strand at 779.835 kb on + strand at 779.835 kb on + strand at 779.836 kb on - strand at 779.836 kb on - strand at 779.836 kb on - strand at 780.080 kb on + strand, within ABIE53_000726 at 780.081 kb on - strand, within ABIE53_000726 at 780.081 kb on - strand, within ABIE53_000726 at 780.433 kb on + strand at 780.433 kb on + strand at 780.433 kb on + strand at 780.434 kb on - strand at 780.467 kb on + strand at 780.467 kb on + strand at 780.467 kb on + strand at 780.467 kb on + strand at 780.467 kb on + strand at 780.468 kb on - strand at 780.468 kb on - strand at 780.476 kb on - strand at 780.476 kb on - strand at 780.641 kb on + strand, within ABIE53_000727 at 780.641 kb on + strand, within ABIE53_000727 at 780.641 kb on + strand, within ABIE53_000727 at 780.642 kb on - strand, within ABIE53_000727 at 780.642 kb on - strand, within ABIE53_000727 at 780.642 kb on - strand, within ABIE53_000727 at 780.802 kb on + strand, within ABIE53_000727 at 780.802 kb on + strand, within ABIE53_000727 at 780.802 kb on + strand, within ABIE53_000727 at 780.802 kb on + strand, within ABIE53_000727 at 780.803 kb on - strand, within ABIE53_000727 at 780.803 kb on - strand, within ABIE53_000727 at 780.842 kb on - strand, within ABIE53_000727 at 780.842 kb on - strand, within ABIE53_000727 at 780.842 kb on - strand, within ABIE53_000727 at 780.842 kb on - strand, within ABIE53_000727 at 780.842 kb on - strand, within ABIE53_000727 at 780.883 kb on + strand, within ABIE53_000727 at 780.884 kb on - strand, within ABIE53_000727 at 780.884 kb on - strand, within ABIE53_000727 at 780.908 kb on + strand, within ABIE53_000727 at 780.908 kb on + strand, within ABIE53_000727 at 780.909 kb on - strand, within ABIE53_000727 at 780.913 kb on + strand, within ABIE53_000727 at 780.914 kb on - strand, within ABIE53_000727 at 780.914 kb on - strand, within ABIE53_000727 at 780.914 kb on - strand, within ABIE53_000727 at 780.914 kb on - strand, within ABIE53_000727 at 781.114 kb on + strand, within ABIE53_000727 at 781.114 kb on + strand, within ABIE53_000727 at 781.114 kb on + strand, within ABIE53_000727 at 781.114 kb on + strand, within ABIE53_000727 at 781.114 kb on + strand, within ABIE53_000727 at 781.114 kb on + strand, within ABIE53_000727 at 781.114 kb on + strand, within ABIE53_000727 at 781.115 kb on - strand, within ABIE53_000727 at 781.115 kb on - strand, within ABIE53_000727 at 781.115 kb on - strand, within ABIE53_000727 at 781.115 kb on - strand, within ABIE53_000727 at 781.115 kb on - strand, within ABIE53_000727 at 781.165 kb on + strand, within ABIE53_000727 at 781.166 kb on - strand, within ABIE53_000727 at 781.166 kb on - strand, within ABIE53_000727 at 781.166 kb on - strand, within ABIE53_000727 at 781.166 kb on - strand, within ABIE53_000727 at 781.166 kb on - strand, within ABIE53_000727 at 781.166 kb on - strand, within ABIE53_000727 at 781.166 kb on - strand, within ABIE53_000727 at 781.166 kb on - strand, within ABIE53_000727 at 781.200 kb on + strand, within ABIE53_000727 at 781.200 kb on + strand, within ABIE53_000727 at 781.201 kb on - strand, within ABIE53_000727 at 781.355 kb on + strand at 781.355 kb on + strand at 781.355 kb on + strand at 781.355 kb on + strand at 781.355 kb on + strand at 781.356 kb on - strand at 781.368 kb on + strand at 781.379 kb on + strand at 781.380 kb on - strand at 781.380 kb on - strand at 781.404 kb on - strand at 781.404 kb on - strand at 781.404 kb on - strand at 781.404 kb on - strand at 781.404 kb on - strand at 781.425 kb on + strand at 781.442 kb on - strand at 781.442 kb on - strand at 781.442 kb on - strand at 781.442 kb on - strand at 781.442 kb on - strand at 781.505 kb on + strand at 781.506 kb on - strand at 781.506 kb on - strand at 781.583 kb on + strand, within ABIE53_000728 at 781.583 kb on + strand, within ABIE53_000728 at 781.583 kb on + strand, within ABIE53_000728 at 781.584 kb on - strand, within ABIE53_000728 at 781.584 kb on - strand, within ABIE53_000728 at 781.584 kb on - strand, within ABIE53_000728 at 781.718 kb on + strand, within ABIE53_000728 at 781.718 kb on + strand, within ABIE53_000728 at 781.765 kb on + strand, within ABIE53_000728 at 781.765 kb on + strand, within ABIE53_000728 at 781.765 kb on + strand, within ABIE53_000728 at 781.872 kb on + strand, within ABIE53_000728 at 781.872 kb on + strand, within ABIE53_000728 at 781.872 kb on + strand, within ABIE53_000728 at 781.873 kb on - strand, within ABIE53_000728 at 781.873 kb on - strand, within ABIE53_000728 at 781.873 kb on - strand, within ABIE53_000728 at 781.873 kb on - strand, within ABIE53_000728 at 781.873 kb on - strand, within ABIE53_000728 at 781.873 kb on - strand, within ABIE53_000728 at 781.890 kb on + strand, within ABIE53_000728 at 781.890 kb on + strand, within ABIE53_000728 at 781.890 kb on + strand, within ABIE53_000728 at 781.890 kb on + strand, within ABIE53_000728 at 781.890 kb on + strand, within ABIE53_000728 at 781.891 kb on - strand, within ABIE53_000728 at 781.891 kb on - strand, within ABIE53_000728 at 781.891 kb on - strand, within ABIE53_000728 at 781.891 kb on - strand, within ABIE53_000728 at 781.891 kb on - strand, within ABIE53_000728 at 782.013 kb on + strand, within ABIE53_000728 at 782.013 kb on + strand, within ABIE53_000728 at 782.013 kb on + strand, within ABIE53_000728 at 782.014 kb on - strand, within ABIE53_000728 at 782.014 kb on - strand, within ABIE53_000728 at 782.014 kb on - strand, within ABIE53_000728 at 782.112 kb on + strand, within ABIE53_000728 at 782.112 kb on + strand, within ABIE53_000728 at 782.113 kb on - strand, within ABIE53_000728 at 782.113 kb on - strand, within ABIE53_000728 at 782.113 kb on - strand, within ABIE53_000728 at 782.115 kb on + strand, within ABIE53_000728 at 782.115 kb on + strand, within ABIE53_000728 at 782.115 kb on + strand, within ABIE53_000728 at 782.115 kb on + strand, within ABIE53_000728 at 782.116 kb on - strand, within ABIE53_000728 at 782.116 kb on - strand, within ABIE53_000728 at 782.163 kb on + strand, within ABIE53_000728 at 782.163 kb on + strand, within ABIE53_000728 at 782.163 kb on + strand, within ABIE53_000728 at 782.164 kb on - strand, within ABIE53_000728 at 782.164 kb on - strand, within ABIE53_000728 at 782.164 kb on - strand, within ABIE53_000728 at 782.333 kb on + strand at 782.333 kb on + strand at 782.334 kb on - strand at 782.334 kb on - strand at 782.334 kb on - strand at 782.353 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days remove 779,752 + -1.8 779,752 + -2.1 779,752 + +0.7 779,753 - -0.9 779,754 + +0.2 779,754 + -0.2 779,754 + -0.3 779,755 - -1.6 779,831 + +2.6 779,831 + +0.2 779,832 - +0.1 779,832 - -2.1 779,835 + -1.1 779,835 + -0.0 779,835 + +2.0 779,835 + +1.1 779,835 + +0.4 779,836 - -1.8 779,836 - -1.4 779,836 - +0.6 780,080 + ABIE53_000726 0.38 -2.2 780,081 - ABIE53_000726 0.38 -1.3 780,081 - ABIE53_000726 0.38 -0.9 780,433 + +2.5 780,433 + -2.7 780,433 + +0.8 780,434 - +0.0 780,467 + -1.8 780,467 + +0.3 780,467 + -0.2 780,467 + +0.6 780,467 + +0.6 780,468 - -3.9 780,468 - -1.5 780,476 - -1.7 780,476 - +0.6 780,641 + ABIE53_000727 0.12 -0.5 780,641 + ABIE53_000727 0.12 -0.5 780,641 + ABIE53_000727 0.12 -0.3 780,642 - ABIE53_000727 0.12 -0.2 780,642 - ABIE53_000727 0.12 -1.1 780,642 - ABIE53_000727 0.12 -0.7 780,802 + ABIE53_000727 0.31 +0.7 780,802 + ABIE53_000727 0.31 -0.7 780,802 + ABIE53_000727 0.31 -0.9 780,802 + ABIE53_000727 0.31 -1.7 780,803 - ABIE53_000727 0.31 -0.8 780,803 - ABIE53_000727 0.31 -0.9 780,842 - ABIE53_000727 0.36 -0.8 780,842 - ABIE53_000727 0.36 +0.3 780,842 - ABIE53_000727 0.36 -0.2 780,842 - ABIE53_000727 0.36 +0.7 780,842 - ABIE53_000727 0.36 -0.6 780,883 + ABIE53_000727 0.40 -0.2 780,884 - ABIE53_000727 0.41 -0.7 780,884 - ABIE53_000727 0.41 -1.2 780,908 + ABIE53_000727 0.43 +1.1 780,908 + ABIE53_000727 0.43 +0.0 780,909 - ABIE53_000727 0.44 -0.5 780,913 + ABIE53_000727 0.44 -1.6 780,914 - ABIE53_000727 0.44 -1.2 780,914 - ABIE53_000727 0.44 -1.4 780,914 - ABIE53_000727 0.44 -1.6 780,914 - ABIE53_000727 0.44 -0.8 781,114 + ABIE53_000727 0.68 +0.3 781,114 + ABIE53_000727 0.68 -2.3 781,114 + ABIE53_000727 0.68 +0.7 781,114 + ABIE53_000727 0.68 +1.1 781,114 + ABIE53_000727 0.68 -0.8 781,114 + ABIE53_000727 0.68 +1.8 781,114 + ABIE53_000727 0.68 +0.3 781,115 - ABIE53_000727 0.68 +0.7 781,115 - ABIE53_000727 0.68 +2.7 781,115 - ABIE53_000727 0.68 -0.3 781,115 - ABIE53_000727 0.68 +0.9 781,115 - ABIE53_000727 0.68 -1.5 781,165 + ABIE53_000727 0.74 -0.3 781,166 - ABIE53_000727 0.74 -0.6 781,166 - ABIE53_000727 0.74 +2.7 781,166 - ABIE53_000727 0.74 -1.3 781,166 - ABIE53_000727 0.74 -1.3 781,166 - ABIE53_000727 0.74 -0.2 781,166 - ABIE53_000727 0.74 -2.2 781,166 - ABIE53_000727 0.74 -1.6 781,166 - ABIE53_000727 0.74 -0.3 781,200 + ABIE53_000727 0.78 -1.7 781,200 + ABIE53_000727 0.78 +1.7 781,201 - ABIE53_000727 0.78 +0.4 781,355 + -3.4 781,355 + +1.7 781,355 + +2.1 781,355 + +1.2 781,355 + +1.7 781,356 - -0.7 781,368 + +1.7 781,379 + -0.3 781,380 - +0.3 781,380 - +1.1 781,404 - -0.7 781,404 - +2.2 781,404 - -2.0 781,404 - -1.2 781,404 - -1.1 781,425 + +2.7 781,442 - -0.4 781,442 - -0.3 781,442 - -1.9 781,442 - -0.2 781,442 - +0.9 781,505 + -2.5 781,506 - -0.9 781,506 - -2.6 781,583 + ABIE53_000728 0.11 -0.8 781,583 + ABIE53_000728 0.11 -0.0 781,583 + ABIE53_000728 0.11 -0.9 781,584 - ABIE53_000728 0.11 -0.2 781,584 - ABIE53_000728 0.11 -1.5 781,584 - ABIE53_000728 0.11 -0.8 781,718 + ABIE53_000728 0.27 +0.1 781,718 + ABIE53_000728 0.27 +1.1 781,765 + ABIE53_000728 0.32 -1.3 781,765 + ABIE53_000728 0.32 +2.3 781,765 + ABIE53_000728 0.32 +0.8 781,872 + ABIE53_000728 0.44 -1.9 781,872 + ABIE53_000728 0.44 +1.1 781,872 + ABIE53_000728 0.44 -1.9 781,873 - ABIE53_000728 0.45 -1.0 781,873 - ABIE53_000728 0.45 -1.2 781,873 - ABIE53_000728 0.45 +1.1 781,873 - ABIE53_000728 0.45 -3.0 781,873 - ABIE53_000728 0.45 -2.7 781,873 - ABIE53_000728 0.45 -1.0 781,890 + ABIE53_000728 0.47 -1.4 781,890 + ABIE53_000728 0.47 -2.3 781,890 + ABIE53_000728 0.47 -1.0 781,890 + ABIE53_000728 0.47 -1.7 781,890 + ABIE53_000728 0.47 -0.7 781,891 - ABIE53_000728 0.47 -1.5 781,891 - ABIE53_000728 0.47 -2.3 781,891 - ABIE53_000728 0.47 -3.0 781,891 - ABIE53_000728 0.47 -0.6 781,891 - ABIE53_000728 0.47 +1.7 782,013 + ABIE53_000728 0.61 -1.4 782,013 + ABIE53_000728 0.61 +1.7 782,013 + ABIE53_000728 0.61 -1.3 782,014 - ABIE53_000728 0.61 +0.7 782,014 - ABIE53_000728 0.61 +0.1 782,014 - ABIE53_000728 0.61 -1.7 782,112 + ABIE53_000728 0.72 +0.1 782,112 + ABIE53_000728 0.72 -1.3 782,113 - ABIE53_000728 0.72 -0.8 782,113 - ABIE53_000728 0.72 +1.2 782,113 - ABIE53_000728 0.72 -1.0 782,115 + ABIE53_000728 0.72 +1.1 782,115 + ABIE53_000728 0.72 -0.3 782,115 + ABIE53_000728 0.72 +0.7 782,115 + ABIE53_000728 0.72 -0.8 782,116 - ABIE53_000728 0.73 +0.8 782,116 - ABIE53_000728 0.73 -2.5 782,163 + ABIE53_000728 0.78 -2.0 782,163 + ABIE53_000728 0.78 -0.8 782,163 + ABIE53_000728 0.78 -1.7 782,164 - ABIE53_000728 0.78 -1.9 782,164 - ABIE53_000728 0.78 +1.7 782,164 - ABIE53_000728 0.78 +0.3 782,333 + -0.2 782,333 + -1.0 782,334 - -1.5 782,334 - +1.5 782,334 - -0.7 782,353 - -2.2
Or see this region's nucleotide sequence