Experiment: Formate/Acetate-Sulfate (30/30-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0220 and DVU0221 are separated by 9 nucleotides DVU0221 and DVU0222 are separated by 11 nucleotides DVU0222 and DVU0223 are separated by 99 nucleotides DVU0223 and DVU0224 are separated by 43 nucleotides
DVU0220: DVU0220 - tail fiber protein, putative (TIGR), at 259,739 to 260,755
DVU0220
DVU0221: DVU0221 - tail fiber assembly protein, putative (TIGR), at 260,765 to 261,208
DVU0221
DVU0222: DVU0222 - hypothetical protein (TIGR), at 261,220 to 261,549
DVU0222
DVU0223: DVU0223 - conserved hypothetical protein (TIGR), at 261,649 to 261,831
DVU0223
DVU0224: DVU0224 - conserved hypothetical protein (TIGR), at 261,875 to 262,270
DVU0224
Position (kb) 260
261
262 Strain fitness (log2 ratio) -2
-1
0
1 at 259.845 kb on - strand, within DVU0220 at 259.845 kb on - strand, within DVU0220 at 260.035 kb on - strand, within DVU0220 at 260.088 kb on - strand, within DVU0220 at 260.152 kb on - strand, within DVU0220 at 260.189 kb on - strand, within DVU0220 at 260.234 kb on + strand, within DVU0220 at 260.234 kb on + strand, within DVU0220 at 260.237 kb on - strand, within DVU0220 at 260.242 kb on - strand, within DVU0220 at 260.270 kb on + strand, within DVU0220 at 260.360 kb on - strand, within DVU0220 at 260.360 kb on - strand, within DVU0220 at 260.374 kb on - strand, within DVU0220 at 260.440 kb on - strand, within DVU0220 at 260.445 kb on - strand, within DVU0220 at 260.563 kb on + strand, within DVU0220 at 260.584 kb on + strand, within DVU0220 at 260.592 kb on - strand, within DVU0220 at 260.620 kb on + strand, within DVU0220 at 260.662 kb on - strand at 260.677 kb on - strand at 260.730 kb on - strand at 260.779 kb on + strand at 260.787 kb on - strand at 260.802 kb on - strand at 260.817 kb on + strand, within DVU0221 at 260.817 kb on + strand, within DVU0221 at 260.857 kb on + strand, within DVU0221 at 260.863 kb on - strand, within DVU0221 at 260.890 kb on - strand, within DVU0221 at 260.910 kb on + strand, within DVU0221 at 260.910 kb on + strand, within DVU0221 at 260.910 kb on + strand, within DVU0221 at 260.918 kb on - strand, within DVU0221 at 260.920 kb on + strand, within DVU0221 at 260.926 kb on + strand, within DVU0221 at 261.068 kb on - strand, within DVU0221 at 261.100 kb on - strand, within DVU0221 at 261.137 kb on - strand, within DVU0221 at 261.165 kb on + strand at 261.173 kb on - strand at 261.196 kb on - strand at 261.232 kb on + strand at 261.232 kb on + strand at 261.240 kb on - strand at 261.506 kb on + strand, within DVU0222 at 261.522 kb on + strand at 261.530 kb on - strand at 261.535 kb on - strand at 261.553 kb on - strand at 261.591 kb on - strand at 261.683 kb on + strand, within DVU0223 at 261.787 kb on + strand, within DVU0223
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (30/30-30 mM) remove 259,845 - DVU0220 0.10 -0.6 259,845 - DVU0220 0.10 +1.0 260,035 - DVU0220 0.29 +0.1 260,088 - DVU0220 0.34 +0.1 260,152 - DVU0220 0.41 +0.2 260,189 - DVU0220 0.44 -0.4 260,234 + DVU0220 0.49 -0.5 260,234 + DVU0220 0.49 +0.0 260,237 - DVU0220 0.49 -0.4 260,242 - DVU0220 0.49 -0.1 260,270 + DVU0220 0.52 +0.1 260,360 - DVU0220 0.61 -0.1 260,360 - DVU0220 0.61 -1.0 260,374 - DVU0220 0.62 +0.3 260,440 - DVU0220 0.69 -0.0 260,445 - DVU0220 0.69 +0.4 260,563 + DVU0220 0.81 +1.6 260,584 + DVU0220 0.83 -1.5 260,592 - DVU0220 0.84 +0.3 260,620 + DVU0220 0.87 -0.3 260,662 - -0.1 260,677 - -0.4 260,730 - -0.0 260,779 + +0.8 260,787 - -0.5 260,802 - -0.9 260,817 + DVU0221 0.12 +0.0 260,817 + DVU0221 0.12 -0.2 260,857 + DVU0221 0.21 -0.7 260,863 - DVU0221 0.22 -2.1 260,890 - DVU0221 0.28 -0.2 260,910 + DVU0221 0.33 -0.3 260,910 + DVU0221 0.33 +0.1 260,910 + DVU0221 0.33 -0.1 260,918 - DVU0221 0.34 -0.1 260,920 + DVU0221 0.35 +0.2 260,926 + DVU0221 0.36 +0.7 261,068 - DVU0221 0.68 -0.0 261,100 - DVU0221 0.75 +0.2 261,137 - DVU0221 0.84 +1.1 261,165 + -0.3 261,173 - -0.8 261,196 - -0.0 261,232 + +0.7 261,232 + -0.0 261,240 - +0.6 261,506 + DVU0222 0.87 -2.0 261,522 + -0.3 261,530 - -0.3 261,535 - +0.2 261,553 - -0.2 261,591 - -0.4 261,683 + DVU0223 0.19 -0.1 261,787 + DVU0223 0.75 +0.8
Or see this region's nucleotide sequence