Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_763 and Pf6N2E2_764 are separated by 68 nucleotides Pf6N2E2_764 and Pf6N2E2_765 are separated by 91 nucleotides Pf6N2E2_765 and Pf6N2E2_766 are separated by 58 nucleotides
Pf6N2E2_763 - Sigma-54 dependent transcriptional regulator, at 874,118 to 875,443
_763
Pf6N2E2_764 - Fap amyloid fiber secretin, at 875,512 to 876,747
_764
Pf6N2E2_765 - Fap system putative outer membrane protein, at 876,839 to 877,585
_765
Pf6N2E2_766 - Fap protein with C39 domain, at 877,644 to 878,324
_766
Position (kb) 875
876
877 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 874.854 kb on + strand, within Pf6N2E2_763 at 874.855 kb on - strand, within Pf6N2E2_763 at 875.003 kb on + strand, within Pf6N2E2_763 at 875.003 kb on + strand, within Pf6N2E2_763 at 875.004 kb on - strand, within Pf6N2E2_763 at 875.006 kb on + strand, within Pf6N2E2_763 at 875.096 kb on + strand, within Pf6N2E2_763 at 875.306 kb on + strand, within Pf6N2E2_763 at 875.412 kb on - strand at 875.412 kb on - strand at 875.483 kb on + strand at 875.484 kb on - strand at 875.498 kb on + strand at 875.498 kb on + strand at 875.499 kb on - strand at 875.499 kb on - strand at 875.513 kb on + strand at 875.513 kb on + strand at 875.513 kb on + strand at 875.513 kb on + strand at 875.514 kb on - strand at 875.514 kb on - strand at 875.514 kb on - strand at 875.514 kb on - strand at 875.514 kb on - strand at 875.519 kb on + strand at 875.519 kb on + strand at 875.519 kb on + strand at 875.519 kb on + strand at 875.519 kb on + strand at 875.520 kb on - strand at 875.520 kb on - strand at 875.520 kb on - strand at 875.520 kb on - strand at 875.636 kb on + strand, within Pf6N2E2_764 at 875.637 kb on - strand, within Pf6N2E2_764 at 875.862 kb on + strand, within Pf6N2E2_764 at 875.862 kb on + strand at 875.862 kb on + strand, within Pf6N2E2_764 at 875.862 kb on + strand, within Pf6N2E2_764 at 875.862 kb on + strand, within Pf6N2E2_764 at 875.863 kb on - strand, within Pf6N2E2_764 at 875.870 kb on + strand, within Pf6N2E2_764 at 876.098 kb on + strand, within Pf6N2E2_764 at 876.098 kb on + strand, within Pf6N2E2_764 at 876.197 kb on + strand, within Pf6N2E2_764 at 876.197 kb on + strand, within Pf6N2E2_764 at 876.197 kb on + strand, within Pf6N2E2_764 at 876.197 kb on + strand, within Pf6N2E2_764 at 876.197 kb on + strand, within Pf6N2E2_764 at 876.198 kb on - strand, within Pf6N2E2_764 at 876.198 kb on - strand, within Pf6N2E2_764 at 876.258 kb on + strand, within Pf6N2E2_764 at 876.258 kb on + strand, within Pf6N2E2_764 at 876.258 kb on + strand, within Pf6N2E2_764 at 876.258 kb on + strand, within Pf6N2E2_764 at 876.259 kb on - strand, within Pf6N2E2_764 at 876.259 kb on - strand, within Pf6N2E2_764 at 876.386 kb on + strand, within Pf6N2E2_764 at 876.446 kb on + strand, within Pf6N2E2_764 at 876.446 kb on + strand, within Pf6N2E2_764 at 876.446 kb on + strand, within Pf6N2E2_764 at 876.663 kb on - strand at 876.754 kb on + strand at 876.755 kb on - strand at 876.755 kb on - strand at 876.788 kb on + strand at 876.788 kb on + strand at 876.788 kb on + strand at 876.789 kb on - strand at 876.797 kb on + strand at 876.797 kb on + strand at 876.797 kb on + strand at 876.798 kb on - strand at 876.798 kb on - strand at 876.798 kb on - strand at 876.798 kb on - strand at 876.798 kb on - strand at 876.798 kb on - strand at 876.808 kb on + strand at 876.808 kb on + strand at 876.835 kb on + strand at 876.835 kb on + strand at 876.835 kb on + strand at 876.835 kb on + strand at 876.836 kb on - strand at 876.836 kb on - strand at 876.836 kb on - strand at 876.959 kb on - strand, within Pf6N2E2_765 at 877.197 kb on + strand, within Pf6N2E2_765 at 877.197 kb on + strand, within Pf6N2E2_765 at 877.197 kb on + strand, within Pf6N2E2_765 at 877.198 kb on - strand, within Pf6N2E2_765 at 877.335 kb on + strand, within Pf6N2E2_765 at 877.335 kb on + strand, within Pf6N2E2_765 at 877.336 kb on - strand, within Pf6N2E2_765 at 877.417 kb on + strand, within Pf6N2E2_765 at 877.417 kb on + strand, within Pf6N2E2_765 at 877.418 kb on - strand, within Pf6N2E2_765 at 877.618 kb on + strand at 877.618 kb on + strand at 877.622 kb on + strand at 877.622 kb on + strand at 877.622 kb on + strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.663 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 874,854 + Pf6N2E2_763 0.56 +0.2 874,855 - Pf6N2E2_763 0.56 -0.3 875,003 + Pf6N2E2_763 0.67 -0.3 875,003 + Pf6N2E2_763 0.67 +0.3 875,004 - Pf6N2E2_763 0.67 -1.3 875,006 + Pf6N2E2_763 0.67 -0.9 875,096 + Pf6N2E2_763 0.74 -0.7 875,306 + Pf6N2E2_763 0.90 +0.3 875,412 - -0.3 875,412 - +0.1 875,483 + -0.1 875,484 - -0.1 875,498 + +1.1 875,498 + -0.9 875,499 - +0.1 875,499 - -1.4 875,513 + +2.6 875,513 + +1.7 875,513 + +3.9 875,513 + +0.1 875,514 - +0.1 875,514 - +0.8 875,514 - -0.3 875,514 - +0.0 875,514 - +0.1 875,519 + +1.0 875,519 + +0.0 875,519 + -0.2 875,519 + +0.2 875,519 + -0.4 875,520 - -0.3 875,520 - +0.6 875,520 - -0.7 875,520 - +0.7 875,636 + Pf6N2E2_764 0.10 +0.3 875,637 - Pf6N2E2_764 0.10 +0.3 875,862 + Pf6N2E2_764 0.28 -1.6 875,862 + +2.2 875,862 + Pf6N2E2_764 0.28 -1.7 875,862 + Pf6N2E2_764 0.28 +1.2 875,862 + Pf6N2E2_764 0.28 +0.8 875,863 - Pf6N2E2_764 0.28 +0.3 875,870 + Pf6N2E2_764 0.29 +1.6 876,098 + Pf6N2E2_764 0.47 +0.7 876,098 + Pf6N2E2_764 0.47 +1.7 876,197 + Pf6N2E2_764 0.55 +1.0 876,197 + Pf6N2E2_764 0.55 -0.6 876,197 + Pf6N2E2_764 0.55 +0.3 876,197 + Pf6N2E2_764 0.55 -0.4 876,197 + Pf6N2E2_764 0.55 +0.6 876,198 - Pf6N2E2_764 0.56 +2.1 876,198 - Pf6N2E2_764 0.56 -0.2 876,258 + Pf6N2E2_764 0.60 +0.7 876,258 + Pf6N2E2_764 0.60 +0.3 876,258 + Pf6N2E2_764 0.60 +1.2 876,258 + Pf6N2E2_764 0.60 +0.5 876,259 - Pf6N2E2_764 0.60 +0.4 876,259 - Pf6N2E2_764 0.60 -0.5 876,386 + Pf6N2E2_764 0.71 +0.0 876,446 + Pf6N2E2_764 0.76 +0.7 876,446 + Pf6N2E2_764 0.76 -1.4 876,446 + Pf6N2E2_764 0.76 +0.7 876,663 - +1.9 876,754 + +1.2 876,755 - +1.2 876,755 - -0.2 876,788 + -0.1 876,788 + +0.8 876,788 + +0.4 876,789 - +0.1 876,797 + -0.8 876,797 + -0.1 876,797 + +1.4 876,798 - -1.6 876,798 - +0.6 876,798 - +1.5 876,798 - +1.4 876,798 - -1.4 876,798 - -0.4 876,808 + +0.6 876,808 + -0.2 876,835 + -0.1 876,835 + +0.3 876,835 + -0.1 876,835 + -1.1 876,836 - +0.3 876,836 - -0.4 876,836 - +0.6 876,959 - Pf6N2E2_765 0.16 -1.5 877,197 + Pf6N2E2_765 0.48 +0.6 877,197 + Pf6N2E2_765 0.48 +0.6 877,197 + Pf6N2E2_765 0.48 +1.7 877,198 - Pf6N2E2_765 0.48 -0.0 877,335 + Pf6N2E2_765 0.66 +0.4 877,335 + Pf6N2E2_765 0.66 -0.1 877,336 - Pf6N2E2_765 0.67 -0.6 877,417 + Pf6N2E2_765 0.77 -0.7 877,417 + Pf6N2E2_765 0.77 +0.2 877,418 - Pf6N2E2_765 0.78 +1.1 877,618 + -0.8 877,618 + +0.8 877,622 + +0.0 877,622 + +1.2 877,622 + -1.1 877,623 - +0.4 877,623 - -1.0 877,623 - -0.2 877,623 - -0.6 877,623 - +0.1 877,623 - +0.6 877,663 - -0.8
Or see this region's nucleotide sequence