Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3361 and Pf6N2E2_3362 are separated by 10 nucleotides Pf6N2E2_3362 and Pf6N2E2_3363 are separated by 28 nucleotides Pf6N2E2_3363 and Pf6N2E2_3364 overlap by 4 nucleotides Pf6N2E2_3364 and Pf6N2E2_3365 are separated by 105 nucleotides
Pf6N2E2_3361 - FIG004454: RNA binding protein, at 3,892,505 to 3,892,813
_3361
Pf6N2E2_3362 - hypothetical protein, at 3,892,824 to 3,893,228
_3362
Pf6N2E2_3363 - Transcription elongation factor GreA, at 3,893,257 to 3,893,739
_3363
Pf6N2E2_3364 - Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), at 3,893,736 to 3,896,957
_3364
Pf6N2E2_3365 - Carbamoyl-phosphate synthase small chain (EC 6.3.5.5), at 3,897,063 to 3,898,199
_3365
Position (kb)
3893
3894
3895
3896
3897 Strain fitness (log2 ratio)
-2
-1
0
1 at 3892.910 kb on - strand, within Pf6N2E2_3362 at 3892.910 kb on - strand, within Pf6N2E2_3362 at 3893.020 kb on - strand, within Pf6N2E2_3362 at 3893.020 kb on - strand, within Pf6N2E2_3362 at 3893.020 kb on - strand, within Pf6N2E2_3362 at 3893.020 kb on - strand, within Pf6N2E2_3362 at 3893.020 kb on - strand, within Pf6N2E2_3362 at 3893.421 kb on - strand, within Pf6N2E2_3363 at 3893.758 kb on - strand at 3893.758 kb on - strand at 3893.758 kb on - strand at 3894.299 kb on - strand, within Pf6N2E2_3364 at 3894.449 kb on - strand, within Pf6N2E2_3364 at 3894.449 kb on - strand, within Pf6N2E2_3364 at 3896.876 kb on - strand at 3897.611 kb on - strand, within Pf6N2E2_3365
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 3,892,910 - Pf6N2E2_3362 0.21 -0.1 3,892,910 - Pf6N2E2_3362 0.21 -2.3 3,893,020 - Pf6N2E2_3362 0.48 -0.4 3,893,020 - Pf6N2E2_3362 0.48 +0.2 3,893,020 - Pf6N2E2_3362 0.48 +0.2 3,893,020 - Pf6N2E2_3362 0.48 -0.9 3,893,020 - Pf6N2E2_3362 0.48 +0.1 3,893,421 - Pf6N2E2_3363 0.34 -1.2 3,893,758 - +0.6 3,893,758 - -0.3 3,893,758 - -0.7 3,894,299 - Pf6N2E2_3364 0.17 -2.2 3,894,449 - Pf6N2E2_3364 0.22 -1.6 3,894,449 - Pf6N2E2_3364 0.22 -0.2 3,896,876 - -0.2 3,897,611 - Pf6N2E2_3365 0.48 -1.4
Or see this region's nucleotide sequence