Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3288

Experiment: Cytosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3287 and Pf6N2E2_3288 are separated by 372 nucleotidesPf6N2E2_3288 and Pf6N2E2_3289 are separated by 16 nucleotides Pf6N2E2_3287 - Rod shape-determining protein MreB, at 3,793,619 to 3,794,656 _3287 Pf6N2E2_3288 - Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7), at 3,795,029 to 3,795,316 _3288 Pf6N2E2_3289 - Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7), at 3,795,333 to 3,796,784 _3289 Position (kb) 3795 3796Strain fitness (log2 ratio) -1 0 1at 3794.801 kb on + strandat 3794.801 kb on + strandat 3794.801 kb on + strandat 3794.904 kb on + strandat 3794.904 kb on + strandat 3794.936 kb on + strandat 3794.936 kb on + strandat 3794.946 kb on + strandat 3794.946 kb on + strandat 3794.954 kb on + strandat 3794.954 kb on + strandat 3794.981 kb on + strandat 3794.981 kb on + strandat 3794.981 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
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3,794,801 + +1.2
3,794,801 + +1.1
3,794,801 + +0.4
3,794,904 + -0.6
3,794,904 + +0.6
3,794,936 + +1.4
3,794,936 + +0.8
3,794,946 + -0.4
3,794,946 + +0.5
3,794,954 + +1.5
3,794,954 + +0.4
3,794,981 + -0.1
3,794,981 + +0.9
3,794,981 + +1.0

Or see this region's nucleotide sequence