Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_149 and Pf6N2E2_150 are separated by 155 nucleotides Pf6N2E2_150 and Pf6N2E2_151 are separated by 2 nucleotides Pf6N2E2_151 and Pf6N2E2_152 are separated by 24 nucleotides Pf6N2E2_152 and Pf6N2E2_153 are separated by 111 nucleotides
Pf6N2E2_149 - Inner membrane component of tripartite multidrug resistance system, at 204,500 to 206,029
_149
Pf6N2E2_150 - UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54), at 206,185 to 206,934
_150
Pf6N2E2_151 - Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8), at 206,937 to 207,440
_151
Pf6N2E2_152 - hypothetical protein, at 207,465 to 207,578
_152
Pf6N2E2_153 - Glutaminyl-tRNA synthetase (EC 6.1.1.18), at 207,690 to 209,390
_153
Position (kb) 206
207 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 205.340 kb on + strand, within Pf6N2E2_149 at 205.341 kb on - strand, within Pf6N2E2_149 at 205.478 kb on + strand, within Pf6N2E2_149 at 205.479 kb on - strand, within Pf6N2E2_149 at 205.479 kb on - strand, within Pf6N2E2_149 at 205.479 kb on - strand, within Pf6N2E2_149 at 205.787 kb on + strand, within Pf6N2E2_149 at 205.787 kb on + strand, within Pf6N2E2_149 at 205.788 kb on - strand, within Pf6N2E2_149 at 205.788 kb on - strand, within Pf6N2E2_149 at 205.788 kb on - strand, within Pf6N2E2_149 at 205.904 kb on + strand at 205.904 kb on + strand at 205.904 kb on + strand at 205.904 kb on + strand at 205.904 kb on + strand at 205.904 kb on + strand at 205.904 kb on + strand at 205.904 kb on + strand at 205.904 kb on + strand at 205.904 kb on + strand at 205.904 kb on + strand at 205.904 kb on + strand at 205.904 kb on + strand at 205.905 kb on - strand at 205.905 kb on - strand at 205.905 kb on - strand at 205.905 kb on - strand at 205.905 kb on - strand at 205.905 kb on - strand at 205.905 kb on - strand at 205.905 kb on - strand at 205.905 kb on - strand at 205.905 kb on - strand at 205.905 kb on - strand at 205.905 kb on - strand at 205.925 kb on + strand at 205.925 kb on + strand at 205.926 kb on - strand at 205.926 kb on - strand at 205.926 kb on - strand at 205.926 kb on - strand at 205.926 kb on - strand at 207.506 kb on - strand, within Pf6N2E2_152 at 207.646 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 205,340 + Pf6N2E2_149 0.55 -0.8 205,341 - Pf6N2E2_149 0.55 -0.4 205,478 + Pf6N2E2_149 0.64 -0.4 205,479 - Pf6N2E2_149 0.64 +0.7 205,479 - Pf6N2E2_149 0.64 -0.3 205,479 - Pf6N2E2_149 0.64 -2.0 205,787 + Pf6N2E2_149 0.84 +0.9 205,787 + Pf6N2E2_149 0.84 -1.3 205,788 - Pf6N2E2_149 0.84 -0.6 205,788 - Pf6N2E2_149 0.84 -1.2 205,788 - Pf6N2E2_149 0.84 +0.4 205,904 + -0.9 205,904 + -0.1 205,904 + -0.4 205,904 + -3.0 205,904 + -3.4 205,904 + -1.0 205,904 + -1.1 205,904 + -0.3 205,904 + -1.2 205,904 + -1.6 205,904 + +1.0 205,904 + -0.1 205,904 + -0.4 205,905 - -3.4 205,905 - -0.2 205,905 - -1.3 205,905 - -0.2 205,905 - +0.2 205,905 - -0.0 205,905 - -0.7 205,905 - -0.3 205,905 - -0.5 205,905 - -0.9 205,905 - +0.2 205,905 - -0.8 205,925 + +0.0 205,925 + -0.8 205,926 - +0.5 205,926 - -2.0 205,926 - -1.8 205,926 - -1.0 205,926 - -0.5 207,506 - Pf6N2E2_152 0.36 -1.4 207,646 + +0.6
Or see this region's nucleotide sequence